View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_37 (Length: 283)
Name: NF8672_low_37
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 41825262 - 41825523
Alignment:
| Q |
19 |
cagtggttgttgtgccacccattatcgtcacaccaccactgcaaccacctccgacgatcatatatccaccgccaacaacccctcctgtttttcctccatc |
118 |
Q |
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| T |
41825262 |
cagtggttgttgtgccacccattatcgtcacaccaccactgcaaccacctccgacgatcatatatccaccgccaacaacccctcctgtttttcctcctcc |
41825361 |
T |
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| Q |
119 |
gagtccaaggacttgtccaattgatgcactcaagcttggactttgtttggatgttcttggaggagttgttcatattgtaattggaaaccctcttaagaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41825362 |
gagtccaaggacttgtccaattgatgcactcaagcttggactttgtttggatgttcttggaggagttgttcatgttgtaattggaaaccctcttaagaat |
41825461 |
T |
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| Q |
219 |
gtgtgttgtcctgttatacaaggattggttgatcttgaagctgcaatttgtctttgtactgc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825462 |
gtgtgttgtcctgttatacaaggattggttgatcttgaagctgcaatttgtctttgtactgc |
41825523 |
T |
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