View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_38 (Length: 262)
Name: NF8672_low_38
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 43383709 - 43383943
Alignment:
| Q |
17 |
gacgcctcacgatgacacaatgactcttggtggaaacgtgg------aaggggaagcggttaataataatgagatgataaactgcatcatcggacacaag |
110 |
Q |
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| T |
43383709 |
gacgcctcacgatgacacaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatcatcggacacaag |
43383808 |
T |
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| Q |
111 |
tgtagcatatgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca------caacaccaacac |
204 |
Q |
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| T |
43383809 |
tgtagcatatgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaacaccaacaccaacac |
43383908 |
T |
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| Q |
205 |
caacactaccatttgatttgaatttcccttttcca |
239 |
Q |
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| T |
43383909 |
caacactaccatttgatttgaatttcccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
46 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
142 |
Q |
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|||||||||| |||||||||| |||||||| |||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
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| Q |
143 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
239 |
Q |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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