View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_39 (Length: 260)
Name: NF8672_low_39
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 14598664 - 14598900
Alignment:
| Q |
15 |
tcataaaggacggcaaggtcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaggtaattg |
114 |
Q |
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| T |
14598664 |
tcataaaggacggcaaggtcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaagtaattg |
14598763 |
T |
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| Q |
115 |
acatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaagcgaatagcaataagagccctgtc |
214 |
Q |
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| T |
14598764 |
acatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactaccaagcgaatagcaataagagccctgtc |
14598863 |
T |
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| Q |
215 |
aataaaatatatatgcacaatcaggtccaagtataat |
251 |
Q |
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| T |
14598864 |
aataaaatatatatgcacaatcaggtccaagtataat |
14598900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 14609812 - 14609622
Alignment:
| Q |
15 |
tcataaaggacggcaaggtcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaggtaattg |
114 |
Q |
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|||| ||||||| | |||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14609812 |
tcatgaaggacgtctaggtcagtgctacgattaactggagaaagctttggaatttggtcaagtatccatgaaaagccgaaccatatctcacaagtaattg |
14609713 |
T |
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| Q |
115 |
acatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaagcgaatagcaataag |
205 |
Q |
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| T |
14609712 |
acataacccacaaccatactgcctctttatttggatgtgtcactctccaatgtaaaaagaagcacattactactaagcgaacaccaataag |
14609622 |
T |
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