View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_40 (Length: 254)
Name: NF8672_low_40
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 25247474 - 25247712
Alignment:
| Q |
1 |
agagttaaaaggagcaacaggtatatcattgccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccgg |
100 |
Q |
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| T |
25247474 |
agagttaaaaggagcaacaggtatatcattgccgtaaacaaacggagaccaaacgtcatactcattgtgaccttggtaagaaggcggtatggcggtccgg |
25247573 |
T |
|
| Q |
101 |
taagtaatctgttggctccggtaggtcatgtaagtatcgagacgatcgtagtatacaccgatgttatcgttgggatttcgagacgaaagtgttacttgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25247574 |
agagtaatctgttggctccggtaggtcatgtaagtatcgagacgatcgtagtatacaccgatgttatcgttgggatttcgagacgaaagtgttacttgaa |
25247673 |
T |
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| Q |
201 |
agttggaggttaagaaatttggttgtgatgcgttgaaag |
239 |
Q |
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| T |
25247674 |
agtttgaggttaagaaatttggttgtgatgcgttgaaag |
25247712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 43076721 - 43076911
Alignment:
| Q |
32 |
ccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccggtaagtaatctgttggctccggtaggtcatgt |
131 |
Q |
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| T |
43076721 |
ccgtaaacaaacggagaccaaacatcaacctctttgtgtccctgatacgacggaggtatggcggttctgtaagtaatttgttggctccggtatgtgacgt |
43076820 |
T |
|
| Q |
132 |
aagtatcgagacgatcgtagtatacaccgatgttatcgttgggatttcgagacgaaagtgttacttggaagttggaggttaagaaatttgg |
222 |
Q |
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| T |
43076821 |
aagaatcaagacgatcgtagtagataccaattttatcgttgggattacgtgaagaaactgtgacttggaaatttgaggttaagaaatttgg |
43076911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 43086948 - 43087093
Alignment:
| Q |
32 |
ccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccggtaagtaatctgttggctccggtaggtcatgt |
131 |
Q |
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| T |
43086948 |
ccgtaaacaaacggagaccaaacatcaacctctttgtgtccctgatacgacggaggtatggcggttctgtaagtaatttgttggctccggtatgtgacgt |
43087047 |
T |
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| Q |
132 |
aagtatcgagacgatcgtagtatacaccgatgttatcgttgggatt |
177 |
Q |
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| T |
43087048 |
aagaatcaagacgatcgtagtagataccgattttattgttgggatt |
43087093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 43090619 - 43090764
Alignment:
| Q |
32 |
ccgtaaacaaacggagaccaaacgtcatactcattgtgtccttggtaagaaggcggtatggcggtccggtaagtaatctgttggctccggtaggtcatgt |
131 |
Q |
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||||||||||||||||||||||| ||| ||| |||||||| || || || || ||||||||||| | ||||||||| |||||||||||||| || | || |
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| T |
43090619 |
ccgtaaacaaacggagaccaaacatcaacctctttgtgtccctgatacgacggaggtatggcggttctgtaagtaatttgttggctccggtatgtgacgt |
43090718 |
T |
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| Q |
132 |
aagtatcgagacgatcgtagtatacaccgatgttatcgttgggatt |
177 |
Q |
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||| ||| |||||||||||||| | |||||| |||| ||||||||| |
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| T |
43090719 |
aagaatcaagacgatcgtagtagataccgattttattgttgggatt |
43090764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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