View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_42 (Length: 253)
Name: NF8672_low_42
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4176260 - 4176494
Alignment:
| Q |
1 |
ccaagcctgaaaattaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaactagagttgaaacctgtgaaggga |
100 |
Q |
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| T |
4176260 |
ccaagcctggaaattaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaactagagttgaaacctgtgaaggga |
4176359 |
T |
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| Q |
101 |
tagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaatttggaatatctg |
200 |
Q |
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| T |
4176360 |
tagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaatttggaatatctg |
4176459 |
T |
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| Q |
201 |
agggatccaattctggcacgacaaggcgatgatgt |
235 |
Q |
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| T |
4176460 |
agggatccaattctggcacgacaaggcgatgatgt |
4176494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 4172199 - 4172341
Alignment:
| Q |
77 |
ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagcc |
176 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||| || | ||||||||| || |
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| T |
4172199 |
ctagagttgaaacctgtgaagggatagagcagttgcaaggcctgcaatgccaccacccacaatgacaacatgttccttttgga---ctgaagattgaacc |
4172295 |
T |
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| Q |
177 |
ttgattgttaatttggaatatctgagggatccaattctggcacgacaag |
225 |
Q |
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|||| ||||||||||| |||||| ||||||||||||| | |||||| |
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| T |
4172296 |
ttga---ttaatttggaacttctgagagatccaattctggtatgacaag |
4172341 |
T |
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