View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_47 (Length: 247)
Name: NF8672_low_47
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4509868 - 4509741
Alignment:
| Q |
1 |
tgaacctgaatttcttgagaaataactgttgggggaagaagaccacgcaagtagtgtgcatccctctctttctcggtgaaggccagtcctttattgaaat |
100 |
Q |
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| T |
4509868 |
tgaacctgaatttcttgagaaataactgttgggggaagaagaccacgcaagtagtgtgcatccctctctttctcggtgaaggccagtcctttattgaaat |
4509769 |
T |
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| Q |
101 |
gtggatctctcaacaaagtatatccact |
128 |
Q |
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| T |
4509768 |
gtggatctctcaacaaagtatatccact |
4509741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 4509697 - 4509624
Alignment:
| Q |
171 |
ttgaatcatcactttagtcttttggaatgagacaattcgttccatgaaattaacaaaattttagaataatctac |
244 |
Q |
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| T |
4509697 |
ttgaatcatcactttagtcttttggaatgagacaattcgttccatgaaattaacaaaattttaaaataatctac |
4509624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 43209070 - 43209145
Alignment:
| Q |
43 |
ccacgcaagtagtgtgcatccctctctttctcggtgaaggccagtcctttattgaaatgtggatctctcaacaaag |
118 |
Q |
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| T |
43209070 |
ccacgcaaataatgcgcatccctctctttctcggtgaaagcaagccctttgttgtattgtggatccctcagcaaag |
43209145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 43434633 - 43434757
Alignment:
| Q |
4 |
acctgaatttcttgagaaataactgttgggggaagaagaccacgcaagtagtgtgcatccctctctttctcggtgaaggccagtcctttattgaaatgtg |
103 |
Q |
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| T |
43434633 |
acctgagtttcttgaggaatagttgttgggggaagaagaccacgcaagtagtgtgcatccctctctttttcagtgaaggccaaccctttgttgaagtgtg |
43434732 |
T |
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| Q |
104 |
gatctctcaacaaagtatatccact |
128 |
Q |
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| T |
43434733 |
gatctcgcaacaatgtataaccact |
43434757 |
T |
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