View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_48 (Length: 244)
Name: NF8672_low_48
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 6885758 - 6885968
Alignment:
| Q |
21 |
actgcaccccaaaacttcattgattcctctctgattatatcagacctacccatctcattatccctaaagaagacaaagtccaccaactgcctttaaaacc |
120 |
Q |
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| T |
6885758 |
actgcaccccaaaacttcattgattcctctctgattatatcagacctacccatctcattatccctaaagaagacaaagtccaccaactgcctttaaaacc |
6885857 |
T |
|
| Q |
121 |
catcttacacatatataggacctcgtttcccttacacattcatatcttcaatattatacctctcatttttcactttccttcaatcattatattactttca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885858 |
catcttacacatatataggacctcgtttcccttacacattcatatcttcaatattatacctctcatttttcactttccttcaatcattatattactttca |
6885957 |
T |
|
| Q |
221 |
ttggcctctga |
231 |
Q |
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||||||||||| |
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| T |
6885958 |
ttggcctctga |
6885968 |
T |
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