View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_5 (Length: 514)
Name: NF8672_low_5
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_5 |
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| [»] scaffold0667 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 7118045 - 7118526
Alignment:
| Q |
1 |
aatttaagtttagggattattttaatcgtatcgtaacttgctggtagttccttttgttattaacaaacaaaaagcgtagtgtcaatgccatggtgcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7118045 |
aatttaagtttagggattattttaatcgtatcgtaacttgctggtagttccttttgttattaacaaacaaaaagcgtagtgtcaatgccatggtgcaaac |
7118144 |
T |
|
| Q |
101 |
gctactttctgtgcctatttagcttataacaattacatgtattgtatccgcattctttatctaatttcatttattttgta---attctaaagtgagtaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7118145 |
gctactttctgtgcctatttagcttataacaattacatgtattgtatccgcattctttatctaatttcatttattttgtaattattctaaagtgagtaag |
7118244 |
T |
|
| Q |
198 |
tttatttttgggaagtggagatagcta---gttgtgcgattctgatccttattatagtatct---ggtataccaatgcataagttgtaaactcgtac--- |
288 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
7118245 |
tttatttttgggaagcggagatagctagttgttgtgcgattctgatccttattatagtatctgcaggtataccaatgcataagttgtaaacttgtacttt |
7118344 |
T |
|
| Q |
289 |
-----------------ttagaaagaaactaagttgaggaattccataccaattcttcatagaatatattttcaatgagccctggaatctgccacaaaca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7118345 |
tgaacaaataatagtatttagaaagaaactaagttgaggaattccataccaattcttcatagaatatattttcaatgagacctggaatctgccacaaaca |
7118444 |
T |
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| Q |
372 |
acttcaaaacaattgcagagtaccttatttaagctaccgttccatacaaatatagaattaattatctttgcaataaacaaaa |
453 |
Q |
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| T |
7118445 |
acttcaaaacaattgcagagtaccttatttaagctaccgttccttacaaatatagaattaattatctttgcaataaacaaaa |
7118526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 289
Target Start/End: Complemental strand, 9317915 - 9317712
Alignment:
| Q |
80 |
tgtcaatgccatggtgcaaacgctactttctgtgcctatttagcttataa------caattacatgtattgtatccgcattctttatctaatttcattta |
173 |
Q |
| |
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|||| ||||||||||| ||| ||||||||||||| ||| |||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
9317915 |
tgtcgatgccatggtgtaaaagctactttctgtgactacttagattataattatatcaatcacatgtattgtatcggcattctttatctaatttcattta |
9317816 |
T |
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| Q |
174 |
ttttgtaattctaaagtgagtaagtttatttttgggaagtggagatagctagttgtgcgattctgatccttattatagtatctggtataccaatgcataa |
273 |
Q |
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| T |
9317815 |
ttttgaaattgt------------tttgtatattaaatgtggtgatagctagttctgcgattctgatccttattatcatatctggtataccaatgcataa |
9317728 |
T |
|
| Q |
274 |
gttgtaaactcgtact |
289 |
Q |
| |
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||| |||||| ||||| |
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| T |
9317727 |
gttataaacttgtact |
9317712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 9317274 - 9317221
Alignment:
| Q |
382 |
aattgcagagtaccttatttaagctaccgttccatacaaatatagaattaatta |
435 |
Q |
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| T |
9317274 |
aattgtagagtaccttatttatgctaccgttccatgcaaatatagaattaatta |
9317221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 9326051 - 9325938
Alignment:
| Q |
30 |
atcgtaacttgctggtagttccttttgttattaacaaacaaaaagcgtag-tgtcaatgccatggtgcaaacgctactttctgtgcctatttagcttata |
128 |
Q |
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||||||| ||||||||||||| |||||||||||| |||||| || || |||||||||||||| || || |||||||| |||| ||| ||| ||||| |
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| T |
9326051 |
atcgtaaattgctggtagttcattttgttattaa---acaaaa-gcataaatgtcaatgccatggcgcgaaagctactttttgtgactacatagattata |
9325956 |
T |
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| Q |
129 |
acaattacatgtattgta |
146 |
Q |
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|||||||||||||||||| |
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| T |
9325955 |
acaattacatgtattgta |
9325938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 128 - 288
Target Start/End: Complemental strand, 37460839 - 37460673
Alignment:
| Q |
128 |
aacaattacatgtattgtatccgcattctttatctaatttcatttat-----------tttgtaattctaaagtgagtaagtttatttttgggaagtgga |
216 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||| |
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| T |
37460839 |
aacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgttttgtaattctaaagtgagtttgtctatttttggg-agt--- |
37460744 |
T |
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| Q |
217 |
gatagctagttgtgcgattctgatccttattatagtatctggtataccaatgcataagttgtaaactcgtac |
288 |
Q |
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||||||||||||| |||| |||||||| |||||||||||||||| |||||||||| ||| ||||| |||| |
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| T |
37460743 |
-ctagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgtac |
37460673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 31729228 - 31729176
Alignment:
| Q |
223 |
tagttgtgcgattctgatccttattatagta--tctggtataccaatgcataa |
273 |
Q |
| |
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| T |
31729228 |
tagttgtgcgattctgatccggattatagtatctctggtatatcaatgcataa |
31729176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 37460940 - 37460866
Alignment:
| Q |
30 |
atcgtaacttgctggtagttccttttgttattaacaaacaaaaagcgtagtgtcaatgccatggtgcaaacgctacttt |
108 |
Q |
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|||||||||||||||||| ||||||||||||| |||| ||| | || |||||||||||||||||||| ||| |||| |
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| T |
37460940 |
atcgtaacttgctggtagctccttttgttatt---aaac-taaaccataatgtcaatgccatggtgcaaaagctccttt |
37460866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 1124 - 1022
Alignment:
| Q |
80 |
tgtcaatgccatggtgcaaacgctactttctgtgcctatttagcttataacaattacatgtattgtatccgcattctttatctaatttcatttattttgt |
179 |
Q |
| |
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|||| |||||||||| |||| |||||| ||||| ||| |||| ||||||||| || |||||||||||| ||||||||||| |||||| |||||||||| |
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| T |
1124 |
tgtcgatgccatggtctaaaccctactt-ctgtgactacttagattataacaactatatgtattgtatcggcattctttatataattttatttattttgc |
1026 |
T |
|
| Q |
180 |
aatt |
183 |
Q |
| |
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|||| |
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|
| T |
1025 |
aatt |
1022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 999 - 958
Alignment:
| Q |
218 |
atagctagttgtgcgattctgatccttattatagtatctggt |
259 |
Q |
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| T |
999 |
atagctagttctgcgattctaatccttattataatatctggt |
958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 2021339 - 2021271
Alignment:
| Q |
377 |
aaaacaattgcagagtaccttatttaagctaccgttccatacaaatatagaattaattatctttgcaat |
445 |
Q |
| |
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|||| |||| ||||| |||||||||||| ||||||| |||||||||||||| || | |||| ||||||| |
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| T |
2021339 |
aaaaaaattacagagcaccttatttaagttaccgtttcatacaaatatagatttgactatccttgcaat |
2021271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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