View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_51 (Length: 238)
Name: NF8672_low_51
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 38569249 - 38569048
Alignment:
| Q |
19 |
acataacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgc |
118 |
Q |
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| T |
38569249 |
acataacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgc |
38569150 |
T |
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| Q |
119 |
tattggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgac |
218 |
Q |
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| T |
38569149 |
tattggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgac |
38569050 |
T |
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| Q |
219 |
ca |
220 |
Q |
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|| |
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| T |
38569049 |
ca |
38569048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 38527832 - 38527652
Alignment:
| Q |
23 |
aacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgctatt |
122 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
38527832 |
aacaaaagaaaaacaagagacagttccatttcacaaactattcacttttgcagattctactgacattttattaatgattgttggtactatcggtgctatt |
38527733 |
T |
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| Q |
123 |
ggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacacc |
203 |
Q |
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| T |
38527732 |
ggaaacggtttgggtttacctcttatgacattattgttcggtcaaatgattgatagttttggtagtaaccaaagtaacacc |
38527652 |
T |
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