View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_52 (Length: 237)
Name: NF8672_low_52
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_52 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 38186647 - 38186511
Alignment:
| Q |
2 |
ctccaagcaaaacatccattaaaatcaaatggaaaccgcaaaagacctgcctgcactaccgaaatcgcacctccacacaacctgctgccccttgacaaca |
101 |
Q |
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| T |
38186647 |
ctccaagcaaaacatccattaaaatcaaatggaaaccgcaaaagacctgcctgcactaccgaaatcgcacctccacacaacctgctaccccttgacaaca |
38186548 |
T |
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| Q |
102 |
caaacaactacaacacaagcaccatcttgcaagacaa |
138 |
Q |
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| T |
38186547 |
caaacaactagaacacaagcaccaccttgcaagacaa |
38186511 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 49036483 - 49036576
Alignment:
| Q |
130 |
gcaagacaaagcttaggattccaacaccactcgtaaaaaagac--ttaggagtgtgagtcctgtccaacatccacctctaagacaacaccttaa |
221 |
Q |
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| T |
49036483 |
gcaagacaaagcttaggattccaacaccattcataaaaaagacaagtcggcgtgtgagtcctctccaacaaccacctccacgacatcaccttaa |
49036576 |
T |
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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 59740 - 59636
Alignment:
| Q |
121 |
caccatcttgcaagacaaagcttaggattccaacaccactcgtaaaaaagactta--ggagtgtgagtcctgtccaacatccacctctaagacaacacct |
218 |
Q |
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| T |
59740 |
caccatctttcgagacaaagtcttggattccaacaccattcgctaaaaagacaagatggggtgtgagtccattccaacatccacctccaagacaacacct |
59641 |
T |
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| Q |
219 |
taatt |
223 |
Q |
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| T |
59640 |
taatt |
59636 |
T |
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