View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_56 (Length: 228)
Name: NF8672_low_56
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_56 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 4510112 - 4509894
Alignment:
| Q |
6 |
actatcctataaagctagggatttttcacaaggctacctgaagatccatcattgccatgtacttctgcaatggaacttgatactgtcttatgttttggat |
105 |
Q |
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| T |
4510112 |
actatcctataaagctagggatttttcacaaggctacctgaagatccatcattgccatgtacttctgcaatggaacttgatactgtcttatgttttggat |
4510013 |
T |
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| Q |
106 |
cattttctttacctataaaaatgaagaaagatttttcattgatatagcgtggactcattcatggtcatacacaatccaacaacatggaaatatttttcat |
205 |
Q |
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| T |
4510012 |
cattttctttacctataaaaatgaagaaagatttttcattgat----cgtggactcattcatggtcatacacaatccaacaacatggaaacatttttcat |
4509917 |
T |
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| Q |
206 |
ataaaagatagaaaaagattact |
228 |
Q |
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| T |
4509916 |
ataaacgatagaaaaagattact |
4509894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 4519259 - 4519192
Alignment:
| Q |
55 |
cattgccatgtacttctgcaatggaacttgatactgtcttatgttttggatcattttctttacctata |
122 |
Q |
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| T |
4519259 |
cattgacatgtacttttgcaattgaacttgatactgttttaggttttagattattttcttcacctata |
4519192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 43434558 - 43434629
Alignment:
| Q |
41 |
acctgaagatccatcattgccatgtacttctgcaatggaacttgatactgtcttatgttttggatcattttc |
112 |
Q |
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| T |
43434558 |
acctgaagatccatcattgccatatatctctgcagcggaacttgatattggcgtatgtgctggatcattttc |
43434629 |
T |
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