View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_60 (Length: 208)
Name: NF8672_low_60
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 1252274 - 1252396
Alignment:
| Q |
74 |
taggggcatgcttaaatcggaggtctaagacccgtttattaaaatctagggaaaactacatttacctcccttgaggtttccccttaaacaaacgtttgtt |
173 |
Q |
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| T |
1252274 |
taggggcatgcttaaatcggaggtgtaagacccgtttattaaaatctagggaaaactacatttacctcccatgaggtttccccttaaacaaacgtttgtt |
1252373 |
T |
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| Q |
174 |
acttaaccccggccaccaccaaa |
196 |
Q |
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| T |
1252374 |
acttaaccccggccaccaacaaa |
1252396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 1251720 - 1251784
Alignment:
| Q |
11 |
aaacgtaaagaatgatgtgaatgtagtccttttatgctccatacagtcttagagaaataccatta |
75 |
Q |
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| T |
1251720 |
aaacgtaaagaacgatgtgaatgtagtccttttatgctccatacagtcttagagaaataccatta |
1251784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 50135031 - 50135059
Alignment:
| Q |
124 |
gaaaactacatttacctcccttgaggttt |
152 |
Q |
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| T |
50135031 |
gaaaactacatttacctcccttgaggttt |
50135059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 35889309 - 35889262
Alignment:
| Q |
24 |
gatgtgaatgtagtccttttatgctccatacagtcttagagaaatacca |
72 |
Q |
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| T |
35889309 |
gatgtgaatgtagtccttttatgctccatacaatc-taaagaaatacca |
35889262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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