View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8672_low_61 (Length: 203)

Name: NF8672_low_61
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8672_low_61
NF8672_low_61
[»] chr7 (8 HSPs)
chr7 (1-203)||(8609362-8609564)
chr7 (103-169)||(29578227-29578293)
chr7 (103-165)||(29582400-29582462)
chr7 (10-131)||(8643850-8643971)
chr7 (139-186)||(8586244-8586291)
chr7 (139-185)||(8616261-8616307)
chr7 (140-185)||(6789096-6789141)
chr7 (100-185)||(8569855-8569940)
[»] chr2 (2 HSPs)
chr2 (139-185)||(43624995-43625041)
chr2 (139-185)||(16662531-16662577)
[»] chr1 (1 HSPs)
chr1 (145-185)||(34467327-34467367)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8609362 - 8609564
Alignment:
Q  1 acagatctctcaccctcgtaaacatcaactgagacacctggttggtcgtcatcacatgtgtggtatacttgtttcttctttacaggaatgatagaatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8609362 acagatctctcaccctcgtaaacatcaactgagacacctggttggtcgtcatcacatgtgtggtatacttgtttcttctttacaggaatgatagaatttc 8609461  T
Q  101 ttggaatcaatacactcatgatatctccttttgtcgatataccaagtgacaaaggtgtaacatctcgcagcactaagtttggaactgatttgatgccttc 200  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8609462 ttggaatcaatacactcatcacatctccttttatcgatataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttc 8609561  T
Q  201 acc 203  Q
    |||    
T  8609562 acc 8609564  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 29578293 - 29578227
Alignment:
Q  103 ggaatcaatacactcatgatatctccttttgtcgatataccaagtgacaaaggtgtaacatctcgca 169  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  29578293 ggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcgca 29578227  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 29582462 - 29582400
Alignment:
Q  103 ggaatcaatacactcatgatatctccttttgtcgatataccaagtgacaaaggtgtaacatct 165  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  29582462 ggaatcaccacactcatgatatctccttttgttgatataccaagtgacaagggtgtaatatct 29582400  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 8643850 - 8643971
Alignment:
Q  10 tcaccctcgtaaacatcaactgagacacctggttggtcgtcatcacatgtgtggtatacttgtttcttctttacaggaatgatagaatttcttggaatca 109  Q
    |||||||| ||||| |||| ||||||||   ||||||| ||||  |||||  ||||||| | |||||| ||||||| |||||| |||||  | ||||||     
T  8643850 tcaccctcataaacttcaattgagacactgagttggtcatcatagcatgttcggtatacgtctttcttttttacagaaatgatcgaattcttgggaatct 8643949  T
Q  110 atacactcatgatatctccttt 131  Q
     |||||||||||||||||||||    
T  8643950 ttacactcatgatatctccttt 8643971  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 8586291 - 8586244
Alignment:
Q  139 ataccaagtgacaaaggtgtaacatctcgcagcactaagtttggaact 186  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  8586291 ataccaagtgacagaggggtaacatctcgcagcaccaagtttggaact 8586244  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 8616261 - 8616307
Alignment:
Q  139 ataccaagtgacaaaggtgtaacatctcgcagcactaagtttggaac 185  Q
    ||||||||||||| ||| ||||||||||||||| | |||||||||||    
T  8616261 ataccaagtgacagaggggtaacatctcgcagcgccaagtttggaac 8616307  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 6789096 - 6789141
Alignment:
Q  140 taccaagtgacaaaggtgtaacatctcgcagcactaagtttggaac 185  Q
    ||||||| ||||| |||||||||||| ||||||| |||||||||||    
T  6789096 taccaagagacaacggtgtaacatcttgcagcaccaagtttggaac 6789141  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 8569855 - 8569940
Alignment:
Q  100 cttggaatcaatacactcatgatatctccttttgtcgatataccaagtgacaaaggtgtaacatctcgcagcactaagtttggaac 185  Q
    ||||||||||  |||||||| ||||||||  |  | || | |||||||||||| ||||||||||||||||  || |||||||||||    
T  8569855 cttggaatcaccacactcataatatctcccctaattgagacaccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaac 8569940  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 43624995 - 43625041
Alignment:
Q  139 ataccaagtgacaaaggtgtaacatctcgcagcactaagtttggaac 185  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||    
T  43624995 ataccaagtgacaaaggggtaacatctcgcagcaccaattttggaac 43625041  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 16662577 - 16662531
Alignment:
Q  139 ataccaagtgacaaaggtgtaacatctcgcagcactaagtttggaac 185  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||||    
T  16662577 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaac 16662531  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 34467367 - 34467327
Alignment:
Q  145 agtgacaaaggtgtaacatctcgcagcactaagtttggaac 185  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  34467367 agtgacaatggtgtaacatctcgcagcaccaagtttggaac 34467327  T

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