View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_8 (Length: 477)
Name: NF8672_low_8
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 564542 - 564992
Alignment:
| Q |
16 |
agttttgatgtttttgttttcaatgcatcaatgatagatggcatagttagagacattgaaagaggaagtttgagtgtagggacagtttgtggtggcaagt |
115 |
Q |
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| T |
564542 |
agttttgatgtttttgttttcaatgcatcaatgatatatggcatagttagagacattgaaagaggaagtttgagtgtagggacagtttgtggtggcaagt |
564641 |
T |
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| Q |
116 |
tgattggtggaagaacaatggtatctacattgagagaagaaagagaagcaataatggatttggaagcattggaaagtgaatctagtactggaatgattaa |
215 |
Q |
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| T |
564642 |
tgattggtggaagaacaatggtatctacattgagagaagaaagagaagcaataatggatttggaagcattggaaagtgaatctagtactggaatgattaa |
564741 |
T |
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| Q |
216 |
ggtgatgtgaaacttgttaggatgaagattaaggagtttcttgatgaactcagaaattgctatttgatgactcacaatggggactgaaaccacagcaatg |
315 |
Q |
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| T |
564742 |
ggtgatgtgaaacttgttaggatgaagattaaggagtttcttgatgaactcagaaattgctatttgatgactcacaatggggactgaaaccacagcaatg |
564841 |
T |
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| Q |
316 |
tgtgtttttctttccatggaaatttgattagtttaggctctgatctgtgttaatggaaggttgatttggttaattaaataggataattaagacaagaaca |
415 |
Q |
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| T |
564842 |
tgtgtttttctttccatggaaatttgattagtttaggctctgatccgtgttaatggaaggttgatttggttaattaaataagataattaagacaagaac- |
564940 |
T |
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| Q |
416 |
aaacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagaataat |
468 |
Q |
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| T |
564941 |
-aacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagagtaat |
564992 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 874139 - 874194
Alignment:
| Q |
297 |
gactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttagg |
352 |
Q |
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| T |
874139 |
gacttaaaccaaagcaatgaatgtttttctatccatggaaatttgattagtttagg |
874194 |
T |
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