View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_9 (Length: 451)
Name: NF8672_low_9
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 9076808 - 9076376
Alignment:
| Q |
1 |
tctagctaattatgcttgtttctccatttaatttgatctcattgacacctagggggttgtaaagcgcgaaacacatttcacttcacagcgtcctgcaaat |
100 |
Q |
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| T |
9076808 |
tctagctaattatgcttgtttctccatttaatttgatctcattgacacctagggggttgtaaagcgcgaaacacatttcacttcacagcgtcctgcaaat |
9076709 |
T |
|
| Q |
101 |
gaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcataagcgcaattacaaggtaacaaatttacaacaagcagcagtcttga |
200 |
Q |
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| T |
9076708 |
gaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcacaagcgcaattacaaggtaacaaatttacaacaagcaacagtcttga |
9076609 |
T |
|
| Q |
201 |
tttttctatttgttaagacatctgatttgtgtgattaatcactgcaaagaaggattaaagttttaaattgtcaatgttatatagtacttgatttatctac |
300 |
Q |
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| T |
9076608 |
tttttctatttgttaagacatcagatttgtgtgattaatcactgcaaagaaggattaaagttttaaattgtcaatgttatatagtacttgatttatctac |
9076509 |
T |
|
| Q |
301 |
attcaaattctgcagatgaagttgcagggtgataaaagtggaaggaagggtcacctttcagtagctactgaggtactgattcatttctaaatgtgtagtt |
400 |
Q |
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| T |
9076508 |
attcaaattctgcagatgaagttgcagggtgataaaagtggaaggaagggtcacctttcagtggctactgaggtactgattcatttctaaatgtgtagtt |
9076409 |
T |
|
| Q |
401 |
aggcaaaaaattgttaaatgtttatggcaaaga |
433 |
Q |
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| T |
9076408 |
aggcaaaaaattgttaaatgtttatggcaaaga |
9076376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 9085580 - 9085189
Alignment:
| Q |
1 |
tctagctaattatgcttgttt-ctccatttaatttgatctcattgacacc-tagggggttgtaaagcgcgaaacacatttcacttcacagcgtcctgcaa |
98 |
Q |
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||||||||| ||||||| ||| |||||||| ||||| || ||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9085580 |
tctagctaactatgctttttttctccattttatttgtacttatttacaacatagggggttgtaaagcgcgaaacacatttcacttcgcagcgtcctgcaa |
9085481 |
T |
|
| Q |
99 |
atgaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcataagcgcaattacaaggtaacaaatttacaacaagcagcagtctt |
198 |
Q |
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| T |
9085480 |
atgaaattatgtctaagattgaggaggctgccaaacctctcggatttaatgttcacaagcgcaattacaaggtaactaattaacaacaagcactagtctt |
9085381 |
T |
|
| Q |
199 |
gatttttctatttgt--taagacatctgatttgtgtgattaatcactgcaaagaaggat-taaagttttaaattgtcaatgttatatagt-acttga-tt |
293 |
Q |
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|||| || |||||| |||||| | | ||| |||||||||||||||| |||||||||| |||||||| ||||| ||| | ||| ||| |||||| | |
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| T |
9085380 |
catttctcaatttgttataagacgtttcattcgtgtgattaatcactgtaaagaaggatccgaagttttagattgttaatatcatacagtaacttgacct |
9085281 |
T |
|
| Q |
294 |
tatctacattcaaattctgcagatgaagttgcagggtgataaaagtggaaggaagggtcacctttcagtagctactgaggtactgattcatt |
385 |
Q |
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| T |
9085280 |
tatctacattttaattatgcagatgaagctgcagggtgataaaagtggaaggaagggtcacctttcagtggctactgaggtactgattcatt |
9085189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 6416784 - 6416393
Alignment:
| Q |
1 |
tctagctaattatgcttgttt-ctccatttaatttgatctcattgacacc-tagggggttgtaaagcgcgaaacacatttcacttcacagcgtcctgcaa |
98 |
Q |
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||||||||| ||||||| ||| |||||||| ||||| || ||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6416784 |
tctagctaactatgctttttttctccattttatttgtacttatttacaacatagggggttgtaaagcgcgaaacacatttcacttcgcagcgtcctgcaa |
6416685 |
T |
|
| Q |
99 |
atgaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcataagcgcaattacaaggtaacaaatttacaacaagcagcagtctt |
198 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||| |
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| T |
6416684 |
atgaaattatgtctaagattgaggaggctgccaaacctctcggatttaatgttcacaagcgcaattacaaggtaactaattaacaacaagcactagtctt |
6416585 |
T |
|
| Q |
199 |
gatttttctatttgt--taagacatctgatttgtgtgattaatcactgcaaagaaggat-taaagttttaaattgtcaatgttatatagt-acttga-tt |
293 |
Q |
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|||| || |||||| |||||| | | ||| |||||||||||||||| |||||||||| |||||||| ||||| ||| | ||| ||| |||||| | |
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| T |
6416584 |
catttctcaatttgttataagacgtttcattcgtgtgattaatcactgtaaagaaggatccgaagttttagattgttaatatcatacagtaacttgacct |
6416485 |
T |
|
| Q |
294 |
tatctacattcaaattctgcagatgaagttgcagggtgataaaagtggaaggaagggtcacctttcagtagctactgaggtactgattcatt |
385 |
Q |
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|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6416484 |
tatctacattttaattatgcagatgaagctgcagggtgataaaagtggaaggaagggtcacctttcagtggctactgaggtactgattcatt |
6416393 |
T |
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