View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_high_5 (Length: 343)
Name: NF8673_high_5
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 130 - 343
Target Start/End: Complemental strand, 10192965 - 10192752
Alignment:
| Q |
130 |
gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaattcaactccttcattttgctctagctnnnnnnnttctactccctca |
229 |
Q |
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| T |
10192965 |
gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaactcaactccttcattttgctctagctcccccccttctactccctcg |
10192866 |
T |
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| Q |
230 |
aattcttccttcacaatcatcaccatgaaatgttttacaaacatgtgaaggtgtgaannnnnnnatcacaagtgaagcagagttcctccttctgaaatag |
329 |
Q |
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| T |
10192865 |
aattcttccttcacaatcatcaccatgaaatgttttacaaacatgtgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttctgaaatag |
10192766 |
T |
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| Q |
330 |
atcaaatcctcttc |
343 |
Q |
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| T |
10192765 |
atcaaatcctcttc |
10192752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 10193290 - 10193160
Alignment:
| Q |
1 |
tacttaactaactgatcaagttagtggaataagcttagttaatatgattccaaactgttggagtgttgactttagcgtgctgacatggccggtaggcttg |
100 |
Q |
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| T |
10193290 |
tacttaactaactgatcaagttagtggaataagcttagttaatatgattccaaactgttggagtgttgactttagcgtgctgacatggccggtaggcttg |
10193191 |
T |
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| Q |
101 |
gtaaatattctgtcaaatttccaatccgtgt |
131 |
Q |
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| T |
10193190 |
gtaaatattctgtcaaatttccaatccgtgt |
10193160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 19460615 - 19460668
Alignment:
| Q |
130 |
gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaa |
183 |
Q |
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| T |
19460615 |
gtaagccctaccatgctttgaatgtctaacttcaccattctctcattcaaagaa |
19460668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 19460816 - 19460844
Alignment:
| Q |
315 |
ctccttctgaaatagatcaaatcctcttc |
343 |
Q |
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| T |
19460816 |
ctccttctgaaatagatcaaatcctcttc |
19460844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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