View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8673_low_1 (Length: 1130)
Name: NF8673_low_1
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_1 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
| [»] scaffold0381 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 789; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 263 - 1115
Target Start/End: Original strand, 44673948 - 44674800
Alignment:
| Q |
263 |
ttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaatt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44673948 |
ttaggcaccggaaagtatttaggtatgccgtctatgattaggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagattaaatt |
44674047 |
T |
|
| Q |
363 |
cttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctcctacatgagtttgtttcatttaccgtc |
462 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44674048 |
cttggagcagcaagtgtttgtccaaggtagggcgcaaagttatgatcaagtcggttcttcaagccattccctcctacatgagtttgtttcatttaccgtc |
44674147 |
T |
|
| Q |
463 |
aacgctaatcactactattgagtgtatgataaacacgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagtta |
562 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44674148 |
aacgctgatcactactattgagtgtatgataaacacgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagtta |
44674247 |
T |
|
| Q |
563 |
tcaatgcataaaaaatacggtggcatggggtttaaggacctctcaactttcaatatcgatgtgaggcaagcaaggttggaagtttctcacggaacctaat |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44674248 |
tcaatgcataaaaaatacggtggcatggggtttaaggacctctcagctttcaatatcgatgtgaggcaagtaaggttggaagtttctcacggaacctaat |
44674347 |
T |
|
| Q |
663 |
actcttgtatctcgtattttcaaggctaagtactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattc |
762 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44674348 |
actcttgtatctcgtattttcaagcctaagtactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattc |
44674447 |
T |
|
| Q |
763 |
ttcgtgcccgattcattgtgcgtggtggagcacgatggagcataggctctggtgagatgattcctattcttggagcaccctggttgtctaatggtgcgtg |
862 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44674448 |
tttgtgcccgattcattgtgcgtggtggagcacgatggagcataggctctggtgagatgattcctattcttggagcaccctggttgtctaatggtgcgtg |
44674547 |
T |
|
| Q |
863 |
tattgatgagaacattgagggaggtcattttgttcaaggatttacggttcagagtttgatgtctgcacaacgaaaagagtggaatacgcctctggttcga |
962 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44674548 |
tattgatgagaacattgagggaggtcattttgttcaaggatttacggttcagagtttgatgtctgcacaacggaaagagtggaatacgcctctggttcga |
44674647 |
T |
|
| Q |
963 |
caggttttcagtcacgatgttgctgatagtattttacatacccctcttttcgaacaagttcaaacggatcatttagtttggaaagcataacggaatggct |
1062 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
44674648 |
caggttttcagtcacgatgttgctgatagtattttacatacccctcttttcgaacaagttcaaacgtatcatttagtttagaaagcataacggaatggct |
44674747 |
T |
|
| Q |
1063 |
gctactccgttcgaagtgcgtacagattatgtgtggaggaattgattgatgtc |
1115 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
44674748 |
gctactccgttcgaagtgcagacaaattatgtgtggaggaattgattgatgtc |
44674800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 44672538 - 44672786
Alignment:
| Q |
19 |
gtcattgttataggcagtccataaaatgaaattcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672538 |
gtcattgttataggcagtccataaaatgaaattcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactga |
44672637 |
T |
|
| Q |
119 |
aatagtaaagtaaaggtgtaaagaacaaatatagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44672638 |
aatagtaaagtaaaggtgtaaagaacaaatatagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatg |
44672737 |
T |
|
| Q |
219 |
agttgaaaaacagtattactaatatattgggggttcgtgcagtgttagg |
267 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
44672738 |
agttgaaaaacagtattgctaatatattgggcgttcgtgcagtgttagg |
44672786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 173 - 435
Target Start/End: Original strand, 26401699 - 26401961
Alignment:
| Q |
173 |
agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg |
272 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| || |||||| |||||||||||||||||| || || || | ||| ||||| || ||||| |||| |
|
|
| T |
26401699 |
agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattacaaacattttagcggtccgtgctgttttaggtaccg |
26401798 |
T |
|
| Q |
273 |
gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag |
372 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||||| | | ||| | ||| ||| |||||||||| || ||||| ||||||||||| || || ||||| || |
|
|
| T |
26401799 |
gtaagtatttaggaatgccatctatgattgggatggatagaatagacacattttcttacattaaggaccgggtttggcaaagaattaactcatggagtag |
26401898 |
T |
|
| Q |
373 |
caagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctc |
435 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||| |
|
|
| T |
26401899 |
caagtgtttgtccaaagcagggcgcgaggttatgatcaagtcagcccttcaagccattccctc |
26401961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 432
Target Start/End: Complemental strand, 8864104 - 8863938
Alignment:
| Q |
266 |
ggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattctt |
365 |
Q |
| |
|
||||| || |||||| |||||||||| || ||||| || |||| | || ||||||||| |||| ||||| || || ||||||||||| |||||||||| |
|
|
| T |
8864104 |
ggcactggtaagtatctaggtatgccttccatgataggacggaataggacgaccaccttttcttatattaaggaccgtgtgtggcaaaggataaattctt |
8864005 |
T |
|
| Q |
366 |
ggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc |
432 |
Q |
| |
|
|||| |||||||| | || |||||| | || || ||||||| || || ||||| ||||||||||| |
|
|
| T |
8864004 |
ggagtagcaagtgcctctcaaaggcacgacgggagtttatgattaagtctgttctacaagccattcc |
8863938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 48768381 - 48768446
Alignment:
| Q |
355 |
aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttct |
420 |
Q |
| |
|
||||||||||||||| || || ||||| || |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48768381 |
aataaattcttggagtagtaattgtttatctaaggcagggcgcgaggttatgatcaaatccgttct |
48768446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 40064782 - 40064706
Alignment:
| Q |
500 |
ttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaaa |
576 |
Q |
| |
|
||||||||||| ||||||||||| || || || |||||||||||||| | |||||| ||| |||| ||||||||||| |
|
|
| T |
40064782 |
ttctggtggggtcatggtagaacaaaccagcacggtatcaattggctaaattgggagaagctatctatgcataaaaa |
40064706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 5612617 - 5612532
Alignment:
| Q |
347 |
tggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc |
432 |
Q |
| |
|
||||||| ||||| | |||||| || || ||||||||||| ||||| | || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
5612617 |
tggcaaaaaataagtagttggagtagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatctgttcttcaagctattcc |
5612532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 8e-64; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 173 - 769
Target Start/End: Original strand, 9529544 - 9530145
Alignment:
| Q |
173 |
agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg |
272 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||| || |||||| |||||||||| |||||| || || || | ||||||||| || ||||| |||| |
|
|
| T |
9529544 |
agtttaccgaagttagaaattttctacagtaggaatgtgccagatgcattgaaaaacaatattacaaacattttagcggttcgtgctgttttaggtaccg |
9529643 |
T |
|
| Q |
273 |
gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag |
372 |
Q |
| |
|
| |||||||||| ||||| ||||||||| ||||| | |||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||| || |
|
|
| T |
9529644 |
gcaagtatttagaaatgccatctatgattaggagggatagaacaaccacatttgcttacattaaggatcgagtttggcaaagaattaactcatggagtag |
9529743 |
T |
|
| Q |
373 |
caagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctccta---catgagtttgtttcatttaccgtcaacgcta |
469 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||| || || ||||||||||||||||| || |||||| ||| ||| ||||| || ||| || |
|
|
| T |
9529744 |
caagtgtttgtccaaggcaaggtacgaggttatgatcaagtcagtccttcaagccattccctcatatgttatgagtctgtatcagttaccctccacgtta |
9529843 |
T |
|
| Q |
470 |
atcactactattgagtgtatgataaacacgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgc |
569 |
Q |
| |
|
||||||| ||| || | ||||| ||||| || ||| |||| ||||| || ||||| || || ||||||| | |||||||||||||||| || |||| |
|
|
| T |
9529844 |
atcactaatatcgaacgaatgatgaacacattttggagggggcatggcagcactaaccataggggcatcaatttgttgagttgggaaaagttgtcgatgc |
9529943 |
T |
|
| Q |
570 |
ataaaaaatacggtggcatggggtttaaggacctctcaactttcaa--tatcgatgtgaggcaagcaaggttggaagtttctcacggaacctaatactct |
667 |
Q |
| |
|
|||||| | | ||||| ||||| || | || ||||| ||||| || ||||||| | | | || ||||| ||||| ||||| || || ||||| |||| |
|
|
| T |
9529944 |
ataaaacacatggtggtatgggattcgaagatctctcgacttttaatttatcgatattacggaaacaaggatggaaatttcttacagagactaattctct |
9530043 |
T |
|
| Q |
668 |
tgtatctcgtattttcaaggctaagtactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgt |
767 |
Q |
| |
|
|||| || ||||||||||| | ||||||||| | |||||||| || ||||| || |||||||| ||| |||||||||| ||||| | ||| |||||| |
|
|
| T |
9530044 |
agtatgccgcattttcaaggcgaggtactttccgaataaatccttccttaatgcgtctattggccacaattcgagctatgtgtggcgtagcatacttcgt |
9530143 |
T |
|
| Q |
768 |
gc |
769 |
Q |
| |
|
|| |
|
|
| T |
9530144 |
gc |
9530145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 272 - 439
Target Start/End: Complemental strand, 36307918 - 36307751
Alignment:
| Q |
272 |
ggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagca |
371 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || ||||| |||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| | |
|
|
| T |
36307918 |
ggaaagtatttaggtatgccgtccatgattggtcgtaatagaacatccacttttgcttatattaaggatcgtgtgtggcaaaggattaattcttggagta |
36307819 |
T |
|
| Q |
372 |
gcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctcctac |
439 |
Q |
| |
|
| |||||| | || || ||||| || ||||||||||| || || ||||| ||||||||||| |||||| |
|
|
| T |
36307818 |
gtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttctccaagccattccttcctac |
36307751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 13813486 - 13813385
Alignment:
| Q |
275 |
aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca |
374 |
Q |
| |
|
||||||||||||||||| || |||||||| || | | || |||| |||||||| || || || || ||||||||||||||||||||||||||||||| |
|
|
| T |
13813486 |
aagtatttaggtatgccttccatgattggacgggataggacggccacttttgcttatatcaaggaccgtgtgtggcaaagaataaattcttggagcagca |
13813387 |
T |
|
| Q |
375 |
ag |
376 |
Q |
| |
|
|| |
|
|
| T |
13813386 |
ag |
13813385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 693 - 805
Target Start/End: Complemental strand, 13701949 - 13701837
Alignment:
| Q |
693 |
tactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggag |
792 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||| || |||||||| ||||| || || |||||| | ||| ||| || |||||| ||||||||| |
|
|
| T |
13701949 |
tactttccgactaaatcctttctcaatgccaacattggtcacaatccgagttatgtttgacggaacattttacgttccctctttattgtgtgtggtggag |
13701850 |
T |
|
| Q |
793 |
cacgatggagcat |
805 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
13701849 |
caagatggagcat |
13701837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 675 - 754
Target Start/End: Complemental strand, 13813110 - 13813031
Alignment:
| Q |
675 |
cgtattttcaaggctaagtactttccaacgaaatcctttctcaatgcatccattggccataatccgagctatgtatggcg |
754 |
Q |
| |
|
|||||||| |||||||| ||||||||| | | ||||||||||||||| || |||||||| ||||||||||| ||||| |
|
|
| T |
13813110 |
cgtatttttaaggctaaatactttccatctacatcctttctcaatgccaaaataggccataacccgagctatgtgtggcg |
13813031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 21278072 - 21278019
Alignment:
| Q |
364 |
ttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggt |
417 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || || |||||||||||||| |
|
|
| T |
21278072 |
ttggagcagcaaatgtttgtccaaggctggtcgtgaggtaatgatcaaatcggt |
21278019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 9e-36; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 275 - 700
Target Start/End: Original strand, 44493397 - 44493827
Alignment:
| Q |
275 |
aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca |
374 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | |||||||||| |||||||| |||| ||| |||||||||||| || ||||| ||||| |||| |
|
|
| T |
44493397 |
aagtatttaggcatgccgtctatgattggcagagatagaacaaccacatttgcttatattatagaccgggtgtggcaacatattaattcgtggagtagca |
44493496 |
T |
|
| Q |
375 |
agtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctccta---catgagtttgtttcatttaccgtcaacgctaat |
471 |
Q |
| |
|
|||| | || ||||||||||| |||||||||||||| || || || ||||| ||||| || || |||||||| ||||| | ||| ||||| | | |
|
|
| T |
44493497 |
agtgcctttctaaggcagggcgtgaagttatgatcaagtctgtgctccaagctattccgtcttatgttatgagtttatttcaataaccaacaacgttggt |
44493596 |
T |
|
| Q |
472 |
cactactattgagtgtatgataaacacgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcat |
571 |
Q |
| |
|
| ||||||| | ||||| |||||||| |||||||||||||| |||||| ||| | || || |||||| ||||||||||||| ||||| |||||| |
|
|
| T |
44493597 |
tatcgctattgaacggatgatgaacacgttttggtggggccatggcagaacttctcatcggggcatgaattggatgagttgggaaaaattatcgatgcat |
44493696 |
T |
|
| Q |
572 |
aaaaaatacggtggcatggggtttaaggacctctcaactttcaatat--cgatgtgaggcaagcaaggttggaagtttctcacggaacctaatactcttg |
669 |
Q |
| |
|
|||| | | ||||||||||| ||||| || |||||| |||||||| | |||||| || ||||| || ||||| ||||| ||||| ||| | | |||| |
|
|
| T |
44493697 |
aaaacacatggtggcatgggttttaaagatctctcagctttcaatcttgcgatgttgggtaagcagggctggaaatttcttacggagcctcactcgcttg |
44493796 |
T |
|
| Q |
670 |
tatctcgtattttcaaggctaagtactttcc |
700 |
Q |
| |
|
| ||| |||| || ||||||| ||||||||| |
|
|
| T |
44493797 |
tctcttgtatctttaaggctaggtactttcc |
44493827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 269 - 438
Target Start/End: Complemental strand, 54563434 - 54563265
Alignment:
| Q |
269 |
accggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttgga |
368 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||| || | | |||||||| || || || ||||| || || ||||||||| | || |||||||||| |
|
|
| T |
54563434 |
accggtaagtatttaggaatgtcgtctatgattggaagagataggacaaccactttcgcctatattaaggaccgtgtgtggcaacgcattaattcttgga |
54563335 |
T |
|
| Q |
369 |
gcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctccta |
438 |
Q |
| |
|
| || ||||| | || ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
54563334 |
gtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagccattccttccta |
54563265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 19822779 - 19822666
Alignment:
| Q |
318 |
ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggt |
417 |
Q |
| |
|
|||| ||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||||||| | || ||||| |||| || || |||||||| ||||| |
|
|
| T |
19822779 |
ccacttttgcctacatcaaagatcgtgtgtggcaaaaaattaattcttggagcagcaagtgtctatctaaggcggggcatgaggtcatgatcaagtcggt |
19822680 |
T |
|
| Q |
418 |
tcttcaagccattc |
431 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
19822679 |
tcttcaagctattc |
19822666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 4485763 - 4485684
Alignment:
| Q |
317 |
accacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcg |
396 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||| |||||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
4485763 |
accacctttgcttatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtgcctctcaaaggcagggcg |
4485684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 705 - 816
Target Start/End: Complemental strand, 12528054 - 12527943
Alignment:
| Q |
705 |
aaatcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagca |
804 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||| ||||| ||| | | |||| | ||| |||| || |||||||||||||||||| ||||||||| |
|
|
| T |
12528054 |
aaatcctttctcaatgccaacattggtcacaatccgagttatgtttggtggagcattttacgttcccgctttattgtgcgtggtggagcaagatggagca |
12527955 |
T |
|
| Q |
805 |
taggctctggtg |
816 |
Q |
| |
|
| || ||||||| |
|
|
| T |
12527954 |
tcggttctggtg |
12527943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 432
Target Start/End: Complemental strand, 14505688 - 14505598
Alignment:
| Q |
342 |
gggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc |
432 |
Q |
| |
|
|||| ||||||| ||||| | ||||||||| || ||||||||||| ||||| | || ||||||||||||| ||||||||||| ||||| |
|
|
| T |
14505688 |
gggtatggcaaaaaataagtatttggagcagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattcc |
14505598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 269 - 559
Target Start/End: Complemental strand, 38490786 - 38490493
Alignment:
| Q |
269 |
accggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttgga |
368 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | | |||||||||| |||||||| ||||| ||||| |||||||||| || |||||||||| |
|
|
| T |
38490786 |
accggaaagtatttaggtatgccgtccatgatcggtcgtgatagaacaaccacttttgcttatattaaggatcgtgtgtggcaaatgattaattcttgga |
38490687 |
T |
|
| Q |
369 |
gcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctccta---catgagtttgtttcatttaccgtcaac |
465 |
Q |
| |
|
| || |||||| | || || ||||| || ||||||||||| || || ||||||||||||||||| || || ||||||| | || || ||||| | || |
|
|
| T |
38490686 |
gtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttcttcaagccattccttcttacgtcatgagtctcttccacttaccaactac |
38490587 |
T |
|
| Q |
466 |
gctaatcactactattgagtgtatgataaacacgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaag |
559 |
Q |
| |
|
||| || ||||| || || | ||||| ||| |||| |||||||| |||||||||||| || |||||| |||||| |||||||||||||| |
|
|
| T |
38490586 |
gctgattactaccatcgaaagaatgatgaactcgttttggtggggtcatggtagaacttcgcatagaggtataaattggttgagttgggaaaag |
38490493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 707 - 848
Target Start/End: Original strand, 17177528 - 17177669
Alignment:
| Q |
707 |
atcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcata |
806 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||| ||||| | ||| | |||||||| || |||||||||||||||||| |||||||| | |
|
|
| T |
17177528 |
atcctttctcaatgccaacattggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcgtt |
17177627 |
T |
|
| Q |
807 |
ggctctggtg-agatgattcctattcttggagcaccctggttg |
848 |
Q |
| |
|
|||||||||| | || ||||||||||||| ||||| |||||| |
|
|
| T |
17177628 |
ggctctggtgcatat-attcctattcttgatgcaccatggttg |
17177669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 266 - 438
Target Start/End: Complemental strand, 22787972 - 22787800
Alignment:
| Q |
266 |
ggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattctt |
365 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| || | | ||| |||| |||||||| ||||| || || |||||||| || ||||||| |
|
|
| T |
22787972 |
ggcactggtaagtatttaggaatgccgtctatgattggaagagataggacatccacatttgcttatattaaggaccgtgtgtggcatcacattaattctt |
22787873 |
T |
|
| Q |
366 |
ggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattccctccta |
438 |
Q |
| |
|
|||| || ||||| | || |||||||| || ||||||| |||||| |||||||| ||||||||||| ||||| |
|
|
| T |
22787872 |
ggagtagtaagtgcctatctaaggcaggacgtgaagttacgatcaagtcggttctccaagccattccttccta |
22787800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 19233903 - 19233994
Alignment:
| Q |
323 |
tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatc |
414 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | |||||||| |||||| || |||||||| || || |||||||| || |||||||| ||||| |
|
|
| T |
19233903 |
tttgcttatattaaagatcgagtttggcagaaaataaattattggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatc |
19233994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 12746563 - 12746502
Alignment:
| Q |
621 |
atgtgaggcaagcaaggttggaagtttctcacggaacctaatactcttgtatctcgtatttt |
682 |
Q |
| |
|
|||| |||||||||||||||||| |||||| | ||||| || ||||||||||| ||||||| |
|
|
| T |
12746563 |
atgttaggcaagcaaggttggaaatttctctcagaaccacattctcttgtatcttgtatttt |
12746502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 12809647 - 12809586
Alignment:
| Q |
621 |
atgtgaggcaagcaaggttggaagtttctcacggaacctaatactcttgtatctcgtatttt |
682 |
Q |
| |
|
|||| |||||||||||||||||| |||||| | ||||| || ||||||||||| ||||||| |
|
|
| T |
12809647 |
atgttaggcaagcaaggttggaaatttctctcagaaccacattctcttgtatcttgtatttt |
12809586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 232 - 408
Target Start/End: Original strand, 12353379 - 12353555
Alignment:
| Q |
232 |
tattactaatatattgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttac |
331 |
Q |
| |
|
||||||| |||| ||||| || ||||| || | || |||||||||||| |||| |||| || |||||||| ||| ||||||| | || ||||| ||| |
|
|
| T |
12353379 |
tattactcatattttgggtgtacgtgcggtccttgggaccggaaagtatctaggcttgccttcaatgattggtagggaccgaactgcaacgtttgcatac |
12353478 |
T |
|
| Q |
332 |
attaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat |
408 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||| || || |||||||| ||||||| |||||| || ||||| |
|
|
| T |
12353479 |
attaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggcagagcgcgaggtcatgat |
12353555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 707 - 834
Target Start/End: Complemental strand, 27011155 - 27011028
Alignment:
| Q |
707 |
atcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcata |
806 |
Q |
| |
|
||||||||||||||| ||| || || |||||||||||||| ||||| | ||| | |||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
27011155 |
atcctttctcaatgccaacataggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcatt |
27011056 |
T |
|
| Q |
807 |
ggctctggtgagatgattcctattcttg |
834 |
Q |
| |
|
|| | ||||| | ||||||||||||| |
|
|
| T |
27011055 |
ggttttggtgcaaatattcctattcttg |
27011028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 28858987 - 28859117
Alignment:
| Q |
245 |
ttgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcggg |
344 |
Q |
| |
|
||||| ||||||||||| | || || || ||||| |||||| |||| |||||||| || ||| | |||||||||| ||||| || |||||||||| | |
|
|
| T |
28858987 |
ttgggtgttcgtgcagttcttggaacaggtaagtacttaggtttgccatctatgatcggaagggatagaacaaccacgtttgcatatattaaagatcatg |
28859086 |
T |
|
| Q |
345 |
tgtggcaaagaataaattcttggagcagcaa |
375 |
Q |
| |
|
| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
28859087 |
tttggcaaaaaatcaattcttggagtagcaa |
28859117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 320 - 426
Target Start/End: Complemental strand, 11605992 - 11605886
Alignment:
| Q |
320 |
acctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttc |
419 |
Q |
| |
|
|||||||||||||| || ||| | |||||||| | ||| ||||||||||| || |||||| | ||||| |||||||| ||||| ||||| |||||||| | |
|
|
| T |
11605992 |
acctttgcttacatcaaggatagagtgtggcataaaatcaattcttggagtagtaagtgtctttccaaagcagggcgtgaagtcatgattaaatcggtcc |
11605893 |
T |
|
| Q |
420 |
ttcaagc |
426 |
Q |
| |
|
||||||| |
|
|
| T |
11605892 |
ttcaagc |
11605886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 533 - 611
Target Start/End: Complemental strand, 21976381 - 21976303
Alignment:
| Q |
533 |
ggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggggtttaaggacctctcaactt |
611 |
Q |
| |
|
|||||||||||| || ||||| ||| |||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
21976381 |
ggtatcaattggatgtcatgggagaagctatcaatgcataaaaactatggtggcatggggtttaaagacctctcaactt |
21976303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 18689563 - 18689648
Alignment:
| Q |
323 |
tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat |
408 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||| ||||| || || ||||| |||||||| |||||||||||||| || ||||| |
|
|
| T |
18689563 |
tttgctaacattaaagacagggtgtggcaaaaaattaattcgtgaagtagcaaatgtttgtcgaaggcagggcgcgaggtcatgat |
18689648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 727 - 815
Target Start/End: Original strand, 42805 - 42893
Alignment:
| Q |
727 |
ttggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagcacgatggagcataggctctggt |
815 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| || |||||||| || || |||||| |
|
|
| T |
42805 |
ttggtcataacccgagttatgtgtggcgcaacattcttcgtgcccgttttattgtccgtggtggcgctcgatggagtattgggtctggt |
42893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 11551699 - 11551763
Alignment:
| Q |
355 |
aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttc |
419 |
Q |
| |
|
||||||||||||||| || || ||||| || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11551699 |
aataaattcttggagtagtaaatgtttatctaaggcagggcgcgaagttatgatcaaatccgttc |
11551763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 45013600 - 45013665
Alignment:
| Q |
355 |
aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttct |
420 |
Q |
| |
|
||||||||||||||| || || ||||| || ||||||| |||||| ||| |||||||||| ||||| |
|
|
| T |
45013600 |
aataaattcttggagtagtaattgtttatctaaggcagtgcgcgaggttgtgatcaaatccgttct |
45013665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 13248 - 13160
Alignment:
| Q |
344 |
gtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc |
432 |
Q |
| |
|
|||||||||||||| | | |||||||||||| |||||||| || || ||| | || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
13248 |
gtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatcaaatctgttcttcaagctattcc |
13160 |
T |
|
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Target: scaffold0381 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 707 - 794
Target Start/End: Original strand, 8631 - 8718
Alignment:
| Q |
707 |
atcctttctcaatgcatccattggccataatccgagctatgtatggcgcaacattcttcgtgcccgattcattgtgcgtggtggagca |
794 |
Q |
| |
|
||||||||||||||| ||| || || |||||||||||||| ||||| | ||| | |||||||| || |||||||||||||||||| |
|
|
| T |
8631 |
atcctttctcaatgccaacataggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagca |
8718 |
T |
|
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