View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8673_low_10 (Length: 309)
Name: NF8673_low_10
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 34681091 - 34681399
Alignment:
| Q |
1 |
gttagaggatggtgtcgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattcagattgagaatgaagtt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34681091 |
gttagaggatggtgtagcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattgagattgagaatgaagtt |
34681190 |
T |
|
| Q |
101 |
atcaaagttggagatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaag |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34681191 |
atcaaagttggaaatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaag |
34681290 |
T |
|
| Q |
201 |
aacttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagatcggttaaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34681291 |
aacttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagatcggttaaatgt |
34681390 |
T |
|
| Q |
301 |
tataaattt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
34681391 |
tataaattt |
34681399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 26978696 - 26979004
Alignment:
| Q |
1 |
gttagaggatggtgtcgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattcagattgagaatgaagtt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26978696 |
gttagaggatggtgtagcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattgagattgagaatgaagtt |
26978795 |
T |
|
| Q |
101 |
atcaaagttggagatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaag |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978796 |
atcaaagttggaaatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaag |
26978895 |
T |
|
| Q |
201 |
aacttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagatcggttaaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26978896 |
aacttttagacggacaatccaccgcgctcaagggactaaattcattgaacgaggttcaattcaaagcactggaggaaagcaggtaggatcggttaaatgt |
26978995 |
T |
|
| Q |
301 |
tataaattt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
26978996 |
tataaattt |
26979004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 27087986 - 27087679
Alignment:
| Q |
2 |
ttagaggatggtgtcgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattcagattgagaatgaagtta |
101 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| | |
|
|
| T |
27087986 |
ttagaggatggggttgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaaaccattgagattgaaaatgaagtga |
27087887 |
T |
|
| Q |
102 |
tcaaagttggagatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27087886 |
tcaaagttggagatgctatgtcatcaaagatgaacactctacaaaccaaagcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
27087787 |
T |
|
| Q |
202 |
acttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagatcggttaaatgtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
27087786 |
acttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaactcaaagcattagaggaaagcaggtaagattggttaaatgtt |
27087687 |
T |
|
| Q |
302 |
ataaattt |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
27087686 |
ataaattt |
27087679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27020389 - 27020677
Alignment:
| Q |
1 |
gttagaggatggtgtcgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattcagattgagaatgaagtt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
27020389 |
gttagaggatggtgtagcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagaggaagccattgagattgagaatgaagtt |
27020488 |
T |
|
| Q |
101 |
atcaaagttggagatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||| | |
|
|
| T |
27020489 |
atcaaagttggagatactatgtcatcaaagatgaacactctacaaaccaaagcggaagatattggaaatattgcaagggtttccttagaaaaacaacatg |
27020588 |
T |
|
| Q |
201 |
aacttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagat |
289 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27020589 |
aacttttagatgggcaatccacagcactcaagggactaaattcattgaacgaggttcaattcaaagcattagaggaaagcaggtaagat |
27020677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 39748786 - 39748502
Alignment:
| Q |
2 |
ttagaggatggtgtcgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattcagattgagaatgaagtta |
101 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | || | |
|
|
| T |
39748786 |
ttagaggatggggtagcattgctcaaggagtcttataattatttgggcaaagaaatagaaaagttaagagatgaagccattgagattgagaataaggtaa |
39748687 |
T |
|
| Q |
102 |
tcaaagttggagatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||| |||| |||||||| | || ||||| |||||||| | |
|
|
| T |
39748686 |
tcaaagttggagatgctatgtcatcaaagatgaacattctacaaagcaaggctgaagatattgaaaatgtggcagggatctctttagataaacaacatca |
39748587 |
T |
|
| Q |
202 |
acttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaa |
286 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39748586 |
acttgtagaaggacaatccacggcactcaagttcctaaattcattgaatgaggttcaattcaaagcactagaggaaagcaggtaa |
39748502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 11632245 - 11632541
Alignment:
| Q |
2 |
ttagaggatggtgtcgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattcagattgagaatgaagtta |
101 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
|
|
| T |
11632245 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagccattgagattgaaaatgaagtga |
11632344 |
T |
|
| Q |
102 |
tcaaagttggagatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| || || |||||||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
11632345 |
tcaaagttggagatgctatgtcatcaaagatgaacacgctacaaagcaaagctgaagatattggaaatatggctgggatttccttaggaaaacaacaaga |
11632444 |
T |
|
| Q |
202 |
acttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagatcggttaaat |
298 |
Q |
| |
|
||||||||| |||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
11632445 |
acttttagatggacaatccacggcactcgaaggcctaaattcgttgaacgaggttcaattcaaagcactagaggagagcaggtaagattggttaaat |
11632541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 1959832 - 1959758
Alignment:
| Q |
55 |
aatagaaaagttaagagatgaagccattcagattgagaatgaagttatcaaagttggagatactatgtcatcaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| | || ||||||||||||||| ||||||||||||| |
|
|
| T |
1959832 |
aatagaaaagttaagagatgaagccattgaaattgagaataaggtaatcaaagttggagatgctatgtcatcaaa |
1959758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University