View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_low_11 (Length: 278)
Name: NF8673_low_11
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 6222214 - 6222475
Alignment:
| Q |
17 |
tgtgtaacgccgaatgagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataa |
116 |
Q |
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| T |
6222214 |
tgtgtaacgccgaacgagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataa |
6222313 |
T |
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| Q |
117 |
cactcttcaccattttcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgtttatgagag |
216 |
Q |
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| T |
6222314 |
cactcttcaccattttcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgtttatgagaa |
6222413 |
T |
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| Q |
217 |
aatgggagccgtaagtatcagaggttttgacggcggtgagagacggaaagataccggaattc |
278 |
Q |
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| T |
6222414 |
aatgggagccgtaagtatcagaggttttgactgcggtgagagacggaaagataccggaattc |
6222475 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 6233020 - 6233182
Alignment:
| Q |
47 |
cttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataacactcttcaccattttcgaaagtttgatca |
146 |
Q |
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|||||||||||| |||| |||||||||||||||||| || || ||| ||||||||||||||||| ||| |||||||| | ||||| | ||||| || |
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| T |
6233020 |
cttaccaccatgtttctcgagttgatcggagagagttccaccgctagcgtattctagaaaaatattgtaatactcttcatcgttttcaacagttttgtct |
6233119 |
T |
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| Q |
147 |
tgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgttt |
209 |
Q |
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| T |
6233120 |
tggccaaaacacttgataacatgtggggatgatcctaaacgatcgagtatttgtttctcgttt |
6233182 |
T |
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