View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_low_12 (Length: 278)
Name: NF8673_low_12
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 1684383 - 1684146
Alignment:
| Q |
19 |
atgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaataattggatgaatg |
118 |
Q |
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| T |
1684383 |
atgctctgctccatccctttgacctttatgttctggtaatt---------tatattcctatagtattgttgtgacttgtgagttaataattggatgaatg |
1684293 |
T |
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| Q |
119 |
atttatacttaacccatgtta-ttaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaactgttcagctcatactat |
217 |
Q |
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| T |
1684292 |
atttatacttaacccatattaattaatatacactttcactgactactgcagatcagcaatggtattggagtaatctctggaactgttcagctcatactat |
1684193 |
T |
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| Q |
218 |
atggctattactggtgcaggggagataatcagattggtgatgataag |
264 |
Q |
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| T |
1684192 |
atggctattactggtgcaggggagataatcagattgatgatgataag |
1684146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 1694818 - 1694564
Alignment:
| Q |
19 |
atgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaataattggatg---- |
114 |
Q |
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| T |
1694818 |
atgctctgctccacccctttgacatttatgttctggtaatt---------tatattcctatagtattgttgtgatttgtgagttaataattgtatgtaat |
1694728 |
T |
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| Q |
115 |
-----------aatgatttatacttaacccatgttattaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaactgt |
203 |
Q |
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| T |
1694727 |
tcaattggattaaagatttatacttaacccatgttattaatatacatttttactgattattgcagatcagtaatggtattggagtaatctctggaactat |
1694628 |
T |
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| Q |
204 |
tcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgataagaat |
267 |
Q |
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| T |
1694627 |
tcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgataagaat |
1694564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 1970616 - 1970554
Alignment:
| Q |
199 |
actgttcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgat |
261 |
Q |
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| T |
1970616 |
actgttcagctcatattatatgcttattactcgtgcaagggagaaaatcagattgatgatgat |
1970554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 1674064 - 1673944
Alignment:
| Q |
139 |
attaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaactgttcagctcatactatatggctattactggtgcaggg |
238 |
Q |
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| T |
1674064 |
attaatatacattggtattgaatattttaggtcagcaatggtattggagcaatctcaggttttgttcagctcatattatatgtttatttttggtgcaagg |
1673965 |
T |
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| Q |
239 |
gagataatcagattggtgatg |
259 |
Q |
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| T |
1673964 |
gagaaaataagaatgatgatg |
1673944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 1699335 - 1699287
Alignment:
| Q |
172 |
agcaatggtattggagtaatctctggaactgttcagctcatactatatg |
220 |
Q |
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| T |
1699335 |
agcaatggtattggagtggtttctggaattgttcagctcatactatatg |
1699287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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