View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8673_low_13 (Length: 263)

Name: NF8673_low_13
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8673_low_13
NF8673_low_13
[»] chr5 (2 HSPs)
chr5 (52-252)||(9198566-9198766)
chr5 (105-136)||(18873184-18873215)
[»] chr6 (1 HSPs)
chr6 (97-136)||(5592648-5592687)
[»] chr3 (9 HSPs)
chr3 (97-136)||(19984641-19984680)
chr3 (97-136)||(32034166-32034205)
chr3 (97-136)||(42637733-42637772)
chr3 (97-137)||(26927166-26927206)
chr3 (96-132)||(39268871-39268907)
chr3 (97-136)||(26926982-26927021)
chr3 (97-136)||(32516187-32516226)
chr3 (105-136)||(39269128-39269159)
chr3 (97-136)||(40926529-40926568)
[»] chr1 (5 HSPs)
chr1 (97-136)||(47086111-47086150)
chr1 (97-136)||(6237958-6237997)
chr1 (97-136)||(7171605-7171644)
chr1 (97-136)||(47377913-47377952)
chr1 (95-132)||(4112779-4112816)
[»] chr8 (3 HSPs)
chr8 (97-136)||(25186599-25186638)
chr8 (97-136)||(41456312-41456351)
chr8 (97-136)||(43901007-43901046)
[»] chr7 (4 HSPs)
chr7 (97-136)||(33834025-33834064)
chr7 (105-136)||(38948403-38948434)
chr7 (97-135)||(5266185-5266223)
chr7 (107-136)||(5266445-5266474)
[»] chr4 (3 HSPs)
chr4 (97-136)||(41743611-41743650)
chr4 (107-136)||(14945229-14945258)
chr4 (100-136)||(53684018-53684054)
[»] chr2 (3 HSPs)
chr2 (105-136)||(4722106-4722137)
chr2 (97-136)||(10485269-10485308)
chr2 (97-133)||(18607246-18607282)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 52 - 252
Target Start/End: Complemental strand, 9198766 - 9198566
Alignment:
Q  52 gttagacctcaaatttcattgtggtataagagcttatcgaattcaaaccggtatttaaggatgagttagacctccaatttcattacgaaaaagggtaaga 151  Q
    |||||||||||||||| ||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9198766 gttagacctcaaattttattatggtataagagcctgttgaattcaaaccggtatttaaggatgagttagacctccaatttcattacgaaaaagggtaaga 9198667  T
Q  152 gtggacaaaaaatagagacaaactatcattttgaacttgaaagtgtaactcgttatcaactttatctctgacgcaaacaaaaacgcaaagtataatctac 251  Q
    ||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9198666 gtggacaaataatagagacaaaccatcattttaaacttaaaagtgtaactcgttatcaactttatctctgacgcaaacaaaaacgcaaagtataatctac 9198567  T
Q  252 c 252  Q
    |    
T  9198566 c 9198566  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 136
Target Start/End: Complemental strand, 18873215 - 18873184
Alignment:
Q  105 tttaaggatgagttagacctccaatttcatta 136  Q
    ||||||||||||||||||||||||||||||||    
T  18873215 tttaaggatgagttagacctccaatttcatta 18873184  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 5592687 - 5592648
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  5592687 aaccggtttttaaggatgagttagacctccaatttcatta 5592648  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 19984680 - 19984641
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  19984680 aaccggtttttaaggatgagttagacctccaatttcatta 19984641  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 32034166 - 32034205
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  32034166 aaccggtttttaaggatgagttagacctccaatttcatta 32034205  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 42637772 - 42637733
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  42637772 aaccggtttttaaggatgagttagacctccaatttcatta 42637733  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 26927166 - 26927206
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcattac 137  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  26927166 aaccggtttttaaggatgagttaggcctccaatttcattac 26927206  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 39268907 - 39268871
Alignment:
Q  96 aaaccggtatttaaggatgagttagacctccaatttc 132  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39268907 aaaccggtttttaaggatgagttagacctccaatttc 39268871  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 26926982 - 26927021
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  26926982 aaccggtttttaaggatgagttaggcctccaatttcatta 26927021  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 32516226 - 32516187
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  32516226 aaccggtttttaaggatgagttaggcctccaatttcatta 32516187  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 136
Target Start/End: Original strand, 39269128 - 39269159
Alignment:
Q  105 tttaaggatgagttagacctccaatttcatta 136  Q
    ||||||||||||||||||||||||||||||||    
T  39269128 tttaaggatgagttagacctccaatttcatta 39269159  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 40926529 - 40926568
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  40926529 aaccggtttttaaggatgagttaggcctccaatttcatta 40926568  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 47086150 - 47086111
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  47086150 aaccggtttttaaggatgagttagacctccaatttcatta 47086111  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 6237997 - 6237958
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  6237997 aaccggtttttaaggatgagttaggcctccaatttcatta 6237958  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 7171605 - 7171644
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  7171605 aaccggtttttaaggatgagttaggcctccaatttcatta 7171644  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 47377913 - 47377952
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  47377913 aaccggtttttaaggatgaattagacctccaatttcatta 47377952  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 4112816 - 4112779
Alignment:
Q  95 caaaccggtatttaaggatgagttagacctccaatttc 132  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4112816 caaaccggtttttaaggatgagttaggcctccaatttc 4112779  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 25186599 - 25186638
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  25186599 aaccggtttttaaggatgagttaggcctccaatttcatta 25186638  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 41456351 - 41456312
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  41456351 aaccggtttttaaggatgagttaggcctccaatttcatta 41456312  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 43901046 - 43901007
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  43901046 aaccggtttttaaggatgagttaggcctccaatttcatta 43901007  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 33834025 - 33834064
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  33834025 aaccggtttttaaggatgagttaggcctccaatttcatta 33834064  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 136
Target Start/End: Complemental strand, 38948434 - 38948403
Alignment:
Q  105 tttaaggatgagttagacctccaatttcatta 136  Q
    ||||||||||||||||||||||||||||||||    
T  38948434 tttaaggatgagttagacctccaatttcatta 38948403  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 5266185 - 5266223
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatt 135  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  5266185 aaccggtttttaaggatgagttaggcctccaatttcatt 5266223  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 5266445 - 5266474
Alignment:
Q  107 taaggatgagttagacctccaatttcatta 136  Q
    ||||||||||||||||||||||||||||||    
T  5266445 taaggatgagttagacctccaatttcatta 5266474  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 41743611 - 41743650
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  41743611 aaccggtttttaaggatgagttaggcctccaatttcatta 41743650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 14945229 - 14945258
Alignment:
Q  107 taaggatgagttagacctccaatttcatta 136  Q
    ||||||||||||||||||||||||||||||    
T  14945229 taaggatgagttagacctccaatttcatta 14945258  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 53684054 - 53684018
Alignment:
Q  100 cggtatttaaggatgagttagacctccaatttcatta 136  Q
    |||| |||||||||||||||| |||||||||||||||    
T  53684054 cggtttttaaggatgagttaggcctccaatttcatta 53684018  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 136
Target Start/End: Original strand, 4722106 - 4722137
Alignment:
Q  105 tttaaggatgagttagacctccaatttcatta 136  Q
    ||||||||||||||||||||||||||||||||    
T  4722106 tttaaggatgagttagacctccaatttcatta 4722137  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 10485269 - 10485308
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttcatta 136  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  10485269 aaccggtttttaaggatgagttaggcctccaatttcatta 10485308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 18607282 - 18607246
Alignment:
Q  97 aaccggtatttaaggatgagttagacctccaatttca 133  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  18607282 aaccggtttttaaggatgagttaggcctccaatttca 18607246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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