View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_low_18 (Length: 237)
Name: NF8673_low_18
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10192755 - 10192534
Alignment:
| Q |
1 |
cttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10192755 |
cttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttcct |
10192656 |
T |
|
| Q |
101 |
tcacatgtccatgttgatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgtttt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10192655 |
tcacatgtccatgtagatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgtttt |
10192556 |
T |
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| Q |
201 |
acatttctttttctgtatttta |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10192555 |
acatttctttttctgtatttta |
10192534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 19460868 - 19460969
Alignment:
| Q |
31 |
tttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcacatgtccatgttgatcttcctggttct |
130 |
Q |
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|||| |||||||||| ||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||||| |
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| T |
19460868 |
tttattactgattctattgacagaatttgttaccctgccaatgttggtagcttggttgcggagagttccttcacatctctgtgtagatcttcctggttct |
19460967 |
T |
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| Q |
131 |
tg |
132 |
Q |
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|| |
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| T |
19460968 |
tg |
19460969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 19461064 - 19461117
Alignment:
| Q |
169 |
tgttgatattgatatatgcccaaatctgttttacatttctttttctgtatttta |
222 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |
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| T |
19461064 |
tgttgatattgatgtatgaacaaatctgttttacatttcttttcctgtatttta |
19461117 |
T |
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