View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_low_2 (Length: 516)
Name: NF8673_low_2
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 499
Target Start/End: Original strand, 9106808 - 9107298
Alignment:
| Q |
9 |
tggtgttcgttgagatataatcgttaagacagaatacaaagaaatgaggtggccgtaaaaatatgatagtttgagatggtacaattatctgttcgaacaa |
108 |
Q |
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| T |
9106808 |
tggtgttcgttgagatatagtcgttaagacagaatacaaagaaatgaggtggccgtaaaaatatgatagtttgagatggtacaattatctgttcgaacaa |
9106907 |
T |
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| Q |
109 |
accagttgtattatacattacaatgaaaatggtcgttgtgcacatgtacttgaagtgaaattggaggataaactcatgtcagcccttgtagggaatgaat |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106908 |
accagttgtattatacattacaatgagaatggtcgttgtacacatgtacttgaagtgaaattggaggataaactcatgtcagcccttgtagggaatgaat |
9107007 |
T |
|
| Q |
209 |
gctagatgattacgatattccggtaagcatgtcttcttgatgactttaatgcaagaggacctgacaatagcgatcttctagacatcgggttctctaaagt |
308 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9107008 |
gctagatgattatgatattctggtaagcatgtcttcttgatgactttaatgcaagaggacctgacaatagcgatcttctagacatcgggttctctaaagt |
9107107 |
T |
|
| Q |
309 |
cagtgaaggttcagtttgttctttcttccaaaggtttctgaaatttcggcctttaaattcttctgacaagaggcagtcatcagaggttttggatttattc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9107108 |
cagtgaaggttcagtttgttctttcttccaaaggtttctgaaatttcggcctttaaattcttctgacaagaggcagtcataagaggttttggatttattc |
9107207 |
T |
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| Q |
409 |
ttcatgcttcgtcaaactcaacttcttcctttgagatagagtgttaacctcaggacccttgctccgttgacctacggcacagactgacttg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9107208 |
ttcatgcttcgtcaaactcaacttcttcctttgagatagagtgttaacctcaggacccttgctccgttgacctacggcacagactgacttg |
9107298 |
T |
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