View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_low_20 (Length: 231)
Name: NF8673_low_20
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 24273907 - 24273696
Alignment:
| Q |
5 |
aatgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattga |
102 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24273907 |
aatgtacataatttaccatcatgagaactaatcttgatagagctcatcccaaccattttgcaaacataactattggctataacaatattaccaccattga |
24273808 |
T |
|
| Q |
103 |
attgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaac |
202 |
Q |
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||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24273807 |
attgctcataggttgaaagccattctctcgtaggacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaac |
24273708 |
T |
|
| Q |
203 |
aactaaggtgat |
214 |
Q |
| |
|
|||||||||||| |
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| T |
24273707 |
aactaaggtgat |
24273696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 30047477 - 30047263
Alignment:
| Q |
2 |
ttcaatgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccat |
99 |
Q |
| |
|
|||| |||||| |||||||||||| |||| |||||||| ||||| | | ||||||| ||||| ||| |||||| ||||||| ||||||| ||||||| |
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| T |
30047477 |
ttcagtgtacaaaatttaccatcatgagtcctaatcttcatagatcacatcccaaccaccttgcagacagaactatgggccatatcaatatttccaccat |
30047378 |
T |
|
| Q |
100 |
tgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaac |
199 |
Q |
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|| |||||||||| ||||| |||| |||| || ||||||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||| || | |
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| T |
30047377 |
ccaactgctcataggatgaaaaccattatctcctaggacaaatatgataagacgctccggaatctagaacccacatatcggtataatgtgtgtgaccatc |
30047278 |
T |
|
| Q |
200 |
aacaactaaggtgat |
214 |
Q |
| |
|
||||||||||||||| |
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| T |
30047277 |
aacaactaaggtgat |
30047263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 13417751 - 13417940
Alignment:
| Q |
7 |
tgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattgaat |
104 |
Q |
| |
|
|||||| |||||||||| | |||| ||||| |||||||||| | ||||||| |||| |||||||||||||||||||||||||| | ||||| ||| |
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| T |
13417751 |
tgtacaaaatttaccattatgagtcctaattttgatagagcccatcccaaccaccttgctgacataactattggccataacaatattgcaaccatctaat |
13417850 |
T |
|
| Q |
105 |
tgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
194 |
Q |
| |
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| |||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||| | |||||||||||||| |
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|
| T |
13417851 |
ttctcataggatgaaaacaattctctcctaggacaaatatgataagacgcttcggaatctagaacccatacattagtgtaatgtgtgtga |
13417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 28706261 - 28706092
Alignment:
| Q |
7 |
tgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattgaat |
104 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| | | ||||||| ||| | | |||||||||||||||||||||| ||||||| ||| |
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|
| T |
28706261 |
tgtacataatttaccatcatgagtcgtaatcttgatagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccatccaat |
28706162 |
T |
|
| Q |
105 |
tgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccaca |
174 |
Q |
| |
|
| |||||||||||||| |||||||||| || |||||||||||||||| ||| |||||||||||| |||| |
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|
| T |
28706161 |
ttctcataggttgaaaatcattctctcctaggacaaatatgataagatgctccggaatctagaacgcaca |
28706092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 9009206 - 9009416
Alignment:
| Q |
2 |
ttcaatgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccat |
99 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||||||||| | |||||||| ||||||||| |||| |||| |||| ||||||| ||||||| |
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|
| T |
9009206 |
ttcagtgtacataatttaccatcatgagtcctaatcttgatagagcccatcccaaccatcttgcaaacagaactgttggtcatagcaatattgccaccat |
9009305 |
T |
|
| Q |
100 |
tgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaac |
199 |
Q |
| |
|
|| | |||||| | ||||| |||||||||| || ||| |||||||||||| ||| ||||| | |||||||||||| |||||||||||||| | | |
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|
| T |
9009306 |
ccaactactcatatgatgaaaatcattctctcctaggacgaatatgataagattctccagaatccaaaacccacacatcggtgtaatgtgtgtgaccttc |
9009405 |
T |
|
| Q |
200 |
aacaactaagg |
210 |
Q |
| |
|
||||||||||| |
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|
| T |
9009406 |
aacaactaagg |
9009416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 53471352 - 53471559
Alignment:
| Q |
2 |
ttcaatgtacataatttaccatcacgagtactaatcttgatagagctc-tccaaccattttgcaaacataactattggccataacaatattaccaccatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||| | ||| | || | | || ||||| ||||||||||||||| ||||||| |
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|
| T |
53471352 |
ttcaatgtacataatttaccatcacgagtcctaatcttaatagagcacatcccaacaacct--aggcagaactagcggccataacaatattgccaccatc |
53471449 |
T |
|
| Q |
101 |
gaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaaca |
200 |
Q |
| |
|
||||||||||||||| ||| ||||||| | || |||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||| || || |
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|
| T |
53471450 |
caattgctcataggttaaaaaccattctcccctaggacaaatatgataagatgctccggaatccagaacccacacatcagtgtaatgtgtgtggccatca |
53471549 |
T |
|
| Q |
201 |
acaactaagg |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
53471550 |
acaactaagg |
53471559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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