View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8673_low_4 (Length: 423)
Name: NF8673_low_4
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8673_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 40491632 - 40491822
Alignment:
| Q |
11 |
cagagacatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgttaattacaagggtaa |
110 |
Q |
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| T |
40491632 |
cagaggcatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgttaattacaagggtaa |
40491731 |
T |
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| Q |
111 |
ttccagttcaaacacggtttcaccgccacctcctccatcctcaaagtccaaaacatgccccaactagctctacatgctgaatattcgtgga |
201 |
Q |
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| T |
40491732 |
ttccagttcaaacacggtttcaccgccacctcctccatcctcaaagtccaaaacatgccccaactagctctacatgctgaatattcatgga |
40491822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 293 - 408
Target Start/End: Original strand, 40491914 - 40492030
Alignment:
| Q |
293 |
cttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaa-aattttccattttccatggggtttgtgtttgtatcgtccgc |
391 |
Q |
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| T |
40491914 |
cttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaatttttttccattttccatggggtttgtgtttgtatcgtccgc |
40492013 |
T |
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| Q |
392 |
ttatactaccatcatac |
408 |
Q |
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| T |
40492014 |
ttatactaccagcatac |
40492030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 40471501 - 40471638
Alignment:
| Q |
11 |
cagagacatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgttaattacaaggg--- |
107 |
Q |
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| T |
40471501 |
cagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatgtgggatcagtttgttgatcctaagggcaa |
40471600 |
T |
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| Q |
108 |
taattccagttcaaacacggtttcaccgccacctcctc |
145 |
Q |
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| T |
40471601 |
taattccagttccaacacggtttcgccgccacctcctc |
40471638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 40481122 - 40481260
Alignment:
| Q |
11 |
cagagacatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgttaattacaagggtaa |
110 |
Q |
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| T |
40481122 |
cagagccatggcacaaaccaaaaaatgggagtgtcttccctgcaaataaacgttcggtgaagaagatgatgtgggataagattgttgatcctaaggg--- |
40481218 |
T |
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| Q |
111 |
ttccagttcaaacacggtttcaccgccacctcctccatcctc |
152 |
Q |
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| T |
40481219 |
ttccagttcaaacacggtttcaccaccacctcctccatcctc |
40481260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 40501575 - 40501728
Alignment:
| Q |
11 |
cagagacatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgttaattacaagggtaa |
110 |
Q |
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| T |
40501575 |
cagaggcatggcccaaaccgaagaataagagtgtcttccctgcaaagaaacgctctgtgaagcaaatgatatgggatgaaattgttgattacaagggtaa |
40501674 |
T |
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| Q |
111 |
ttccagttcaaacacggtttc---accgccacctcctccatcctcaaagtccaa |
161 |
Q |
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| T |
40501675 |
ttacaattcaaacaccgtttctcgacctcctcctcctcagtcctcaaagtccaa |
40501728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 402
Target Start/End: Original strand, 40481359 - 40481470
Alignment:
| Q |
294 |
ttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaaaattttccattttcc---atggggtttgtgtttgtatcgtccg |
390 |
Q |
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| T |
40481359 |
ttgttgttcattatgtagtcgagcttacttttgcagtgatgttttacttgagtgaaaaatttcccatttttcatgatggggtttgtatttgtatcatcca |
40481458 |
T |
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| Q |
391 |
cttatactacca |
402 |
Q |
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| T |
40481459 |
cttatattacca |
40481470 |
T |
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