View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8673_low_5 (Length: 380)

Name: NF8673_low_5
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8673_low_5
NF8673_low_5
[»] chr5 (1 HSPs)
chr5 (38-357)||(23086805-23087124)
[»] chr6 (5 HSPs)
chr6 (65-255)||(19746422-19746612)
chr6 (56-268)||(5979160-5979372)
chr6 (65-188)||(34861623-34861746)
chr6 (316-357)||(33576193-33576234)
chr6 (308-356)||(19746692-19746740)
[»] chr3 (2 HSPs)
chr3 (47-187)||(36340329-36340469)
chr3 (325-357)||(3837932-3837964)
[»] chr8 (4 HSPs)
chr8 (308-358)||(11339417-11339467)
chr8 (308-357)||(11345099-11345148)
chr8 (308-357)||(11338574-11338623)
chr8 (325-357)||(40794187-40794219)
[»] scaffold0097 (1 HSPs)
scaffold0097 (69-110)||(16131-16172)
[»] chr7 (1 HSPs)
chr7 (68-113)||(22524938-22524983)
[»] chr2 (1 HSPs)
chr2 (69-110)||(20712292-20712333)
[»] scaffold0267 (1 HSPs)
scaffold0267 (325-357)||(13413-13445)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 38 - 357
Target Start/End: Complemental strand, 23087124 - 23086805
Alignment:
Q  38 gtaaactttaaaacttgtaaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgt 137  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  23087124 gtaaattttaaaacttgtaaatggaataagagaacttacttccaacaagtcgaaaccaagctttcaacataatccatggcagaaaaccaacacagtttgt 23087025  T
Q  138 tggaaattctaattctttctactctctcgtctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatgtccatccgtaga 237  Q
    |||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23087024 tggaaattttaattctctctactcgctcatctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatctccatccgtaga 23086925  T
Q  238 aaggtacaatggtaacaatggaataccacattcagtgagtccatagaaattcaagttatggtatattttgaagtagttaattctaaacaactgagtccaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||  |||||||||||||||||||||    
T  23086924 aaggtacaatggtaacaatggaataccacattcagtgagtccataaaaattcaagttatggtagattttatagtagtcgattctaaacaactgagtccaa 23086825  T
Q  338 gattcttgaactccaaactc 357  Q
    || |||||||||||||||||    
T  23086824 gactcttgaactccaaactc 23086805  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 19746422 - 19746612
Alignment:
Q  65 aagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattctttctactctct 164  Q
    ||||||||||||||||||  |||||||| |||||||||  |||| ||||| | ||||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  19746422 aagagaacttacttccaatgagtcgaaatcaagctttcagcatagtccattgcagaaaaccaacacagtttgctggaaattttaactctctctactctct 19746521  T
Q  165 cgtctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatgtccatccgtagaaaggtacaatggtaacaa 255  Q
      |||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||   ||| | |||||||||||| ||| |||||    
T  19746522 tatctctcagattatagataattgctcggtcatcttcataatttgccaatatcagtgtatcgtcattcttagaaaggtacagtggcaacaa 19746612  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 5979372 - 5979160
Alignment:
Q  56 aaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattcttt 155  Q
    ||||| || ||||||||||||||||||  |||||||||||||||||| |  ||||| ||||  || |||||||  | |||||||||||||| |||||| |    
T  5979372 aaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggcggagaaccaacttattttgttggaaattccaattctct 5979273  T
Q  156 ctactctctcgtctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatgtccatccgtagaaaggtacaatggtaacaa 255  Q
    |||||||||  ||||||||||||||||||||| | |  |  |||| |  ||||| ||| || | ||||| ||||| | | ||||||||||| ||||||||    
T  5979272 ctactctcttatctctccgattatagataattactcttttgtctttatcatttgtcaagatcaatgtatctccattcttcgaaaggtacaaaggtaacaa 5979173  T
Q  256 tggaataccacat 268  Q
    |||| || |||||    
T  5979172 tggagtatcacat 5979160  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 34861623 - 34861746
Alignment:
Q  65 aagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattctttctactctct 164  Q
    ||||||||||||||||||  ||||| ||| |||||||| || |||||||||| ||| ||||||   | || |||||||||||||  ||| ||||||||||    
T  34861623 aagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggcagagaaccaatgaatttcgttggaaattctagctctatctactctct 34861722  T
Q  165 cgtctctccgattatagataattg 188  Q
      || |||  ||||||||||||||    
T  34861723 tatccctcttattatagataattg 34861746  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 33576234 - 33576193
Alignment:
Q  316 aattctaaacaactgagtccaagattcttgaactccaaactc 357  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  33576234 aattctaaataactgagtccaagactcttgaactccaaactc 33576193  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 19746692 - 19746740
Alignment:
Q  308 aagtagttaattctaaacaactgagtccaagattcttgaactccaaact 356  Q
    ||||||| ||||||||| |||  ||||||||| ||||||||||||||||    
T  19746692 aagtagtcaattctaaataacaaagtccaagactcttgaactccaaact 19746740  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 36340469 - 36340329
Alignment:
Q  47 aaaacttgtaaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattc 146  Q
    |||| ||||||||  || |||||||||||||||||||  ||||||||||||||||| |||||||| | || |||  |||| || | || |||||||||||    
T  36340469 aaaaattgtaaatcttagaagagaacttacttccaacgtgtcgaaaccaagctttcaacataatcaaaggcagaggaccagcatatttcgttggaaattc 36340370  T
Q  147 taattctttctactctctcgtctctccgattatagataatt 187  Q
    || || | ||||||||||  |||||| ||||||| ||||||    
T  36340369 tagttttctctactctcttatctctctgattatatataatt 36340329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 3837964 - 3837932
Alignment:
Q  325 caactgagtccaagattcttgaactccaaactc 357  Q
    ||||||||||||||| |||||||||||||||||    
T  3837964 caactgagtccaagactcttgaactccaaactc 3837932  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 11339417 - 11339467
Alignment:
Q  308 aagtagttaattctaaacaactgagtccaagattcttgaactccaaactcg 358  Q
    ||||||| ||||||||| || ||||||||||||||||||| ||||||||||    
T  11339417 aagtagtcaattctaaataattgagtccaagattcttgaaatccaaactcg 11339467  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 11345099 - 11345148
Alignment:
Q  308 aagtagttaattctaaacaactgagtccaagattcttgaactccaaactc 357  Q
    ||||||| ||||||||| || ||||||||||||||||||| |||||||||    
T  11345099 aagtagtcaattctaaataattgagtccaagattcttgaaatccaaactc 11345148  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 11338574 - 11338623
Alignment:
Q  308 aagtagttaattctaaacaactgagtccaagattcttgaactccaaactc 357  Q
    |||||||||| |||||| || |||| |||||||||||||| |||||||||    
T  11338574 aagtagttaactctaaataattgagaccaagattcttgaaatccaaactc 11338623  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 40794187 - 40794219
Alignment:
Q  325 caactgagtccaagattcttgaactccaaactc 357  Q
    |||| ||||||||||||||||||||||||||||    
T  40794187 caaccgagtccaagattcttgaactccaaactc 40794219  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 16131 - 16172
Alignment:
Q  69 gaacttacttccaacaagtcgaaaccaagctttccacataat 110  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  16131 gaacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 22524938 - 22524983
Alignment:
Q  68 agaacttacttccaacaagtcgaaaccaagctttccacataatcca 113  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  22524938 agaacttactttcaagaagttgaaaccaagctttcaacataatcca 22524983  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 20712292 - 20712333
Alignment:
Q  69 gaacttacttccaacaagtcgaaaccaagctttccacataat 110  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  20712292 gaacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 13445 - 13413
Alignment:
Q  325 caactgagtccaagattcttgaactccaaactc 357  Q
    ||||||||||||||| |||||||||||||||||    
T  13445 caactgagtccaagactcttgaactccaaactc 13413  T

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