View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8673_low_6 (Length: 362)

Name: NF8673_low_6
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8673_low_6
NF8673_low_6
[»] chr1 (1 HSPs)
chr1 (15-346)||(24273936-24274264)
[»] chr3 (9 HSPs)
chr3 (27-346)||(13417389-13417708)
chr3 (176-346)||(30047642-30047814)
chr3 (10-249)||(28706287-28706524)
chr3 (154-337)||(27367537-27367707)
chr3 (263-337)||(18726266-18726340)
chr3 (27-86)||(30047515-30047574)
chr3 (154-216)||(18726188-18726250)
chr3 (273-326)||(27338679-27338732)
chr3 (278-346)||(28706521-28706589)
[»] chr4 (2 HSPs)
chr4 (114-339)||(53471084-53471311)
chr4 (105-249)||(9008945-9009089)
[»] scaffold0043 (1 HSPs)
scaffold0043 (241-337)||(79390-79488)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 24273936 - 24274264
Alignment:
Q  15 acgaataatattatatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaa 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |   ||  ||||||| |    
T  24273936 acgaataatattatatctttgagtcttctggacaagaaggggtttagttttaaaagtgaaggtggagctatacatatttt-caagggtt--caagtgtga 24274032  T
Q  115 ttttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatat 214  Q
    || ||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24274033 ttctgaaaggtgtgaagcagagtactttgtactttttacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatat 24274132  T
Q  215 gacgaagttgtggcatatgaggcttgggcatatgagtgagatgggtgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24274133 gacgaagttgtggcatatgaggcttgggcatatgagtgagatgggtgcaaattctggctaaagatgatattctttgtgggcataagataaaagatcttgg 24274232  T
Q  315 gttctgtgaacactgtgtttttgggtaactac 346  Q
    |||| |||||||||||||||||||||||||||    
T  24274233 gttccgtgaacactgtgtttttgggtaactac 24274264  T

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Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 27 - 346
Target Start/End: Complemental strand, 13417708 - 13417389
Alignment:
Q  27 atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaaggtg 126  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||   || | || |||  |    | ||||  || |||||||||||||    
T  13417708 atatctctgagtcttttggacaagaaggggtttagtttcaaaagtgaaggtggagagttatacatgtttgcaagggt-tcaaccgtgattttgaaaggtg 13417610  T
Q  127 tgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtg 226  Q
    |||| | | ||||| | ||||||||||||||||||||  |||||| |   ||||||||||||||||| |||||||||||  |||||||||||| ||||||    
T  13417609 tgaaacgatgtactctctactttctacaaggtactacactatctgcttaagttgttgttgcttcctccgagattgaccataaagatatgacgaggttgtg 13417510  T
Q  227 gcatatgaggcttgggcatatgagtgaga-tggg-tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaa 324  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||| ||| ||  | || ||||||||||||||||||    
T  13417509 gcatatgaggcttgggcatatgagtgagagtgggatgcaaattctggctaaagataatcttctttgtgagcaaaatct-aaggatcttgggttctgtgaa 13417411  T
Q  325 cactgtgtttttgggtaactac 346  Q
    ||||||||||||||| ||||||    
T  13417410 cactgtgtttttgggaaactac 13417389  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 30047642 - 30047814
Alignment:
Q  176 tgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatgagtgagatggg--tgcaaattctggct 273  Q
    |||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||  |||  |||||||||| |||    
T  30047642 tgttgttgttgcttcctccgagattgactaagaagaaatgaagaagttgtggcatatgaggcttggacatatgagtgagtaggggatgcaaattctagct 30047741  T
Q  274 aaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactac 346  Q
    ||||||||| || ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  30047742 aaagatgatcttatttgtgggcacaaaataaatgatcttgggttctgtgaaaactgtgtttttgggaaactac 30047814  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 28706287 - 28706524
Alignment:
Q  10 acatcacgaataatattatatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaag 109  Q
    |||| ||||| ||| | |||| ||||||||||||||||||||||||||||||||| |||  ||||| ||||| ||||||| |||  | |   ||  ||||    
T  28706287 acatgacgaagaatctgatatttttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtttg-caagggtt--caag 28706383  T
Q  110 tgtaattttgaaa-ggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaaga 208  Q
    ||| |||  |||| ||||||||||  |||||| | ||||||||||||||||| ||  || |||||  || || ||||||||||||  |||||||||||||    
T  28706384 tgtgattcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctccaagattgaccaaga 28706483  T
Q  209 agatatgacgaagttgtggcatatgaggcttgggcatatga 249  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  28706484 agatatgacgaagttgtggcataagaggcttgcgcatatga 28706524  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 337
Target Start/End: Complemental strand, 27367707 - 27367537
Alignment:
Q  154 aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatgagtga 253  Q
    ||||||||| | ||||||||  |||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| |   ||       ||||    
T  27367707 aaggtactatgctatctgattctgttgttgttgcttcctccgaaattgaccaagaagatatgacaaaattgtggcatatgagtcagagg-------gtga 27367615  T
Q  254 gatgggtgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttg 337  Q
          || ||||| ||| ||||||||||  ||||||||||||||||||||| ||| |||||||||||||||| |||| |||||    
T  27367614 ------tgaaaattttggataaagatgatcctctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttg 27367537  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 18726266 - 18726340
Alignment:
Q  263 aaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttg 337  Q
    ||||| ||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |||| |||||    
T  18726266 aaattttggataaagatgatcttctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttg 18726340  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 30047515 - 30047574
Alignment:
Q  27 atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctata 86  Q
    |||||| |||||||||||||||||||| |||||||||| |||  ||||||||||| ||||    
T  30047515 atatctctgagtcttttggacaagaagaggtttagtttcaaaggtgaaggtggagttata 30047574  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 18726188 - 18726250
Alignment:
Q  154 aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatga 216  Q
    ||||||||| | ||||||||  |||||||||||||||||| || |||| ||||||||||||||    
T  18726188 aaggtactatgctatctgattatgttgttgttgcttcctccgaaattggccaagaagatatga 18726250  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 27338732 - 27338679
Alignment:
Q  273 taaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaaca 326  Q
    |||| ||||| ||||||||| |||||||||||| ||| ||||||||||||||||    
T  27338732 taaacatgatcttctttgtgagcacaagataaaggattttgggttctgtgaaca 27338679  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 28706521 - 28706589
Alignment:
Q  278 atgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactac 346  Q
    |||||||||||| |||||| ||||| || ||||||| ||| ||| |||||||||||| |||| ||||||    
T  28706521 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactac 28706589  T

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Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 114 - 339
Target Start/End: Complemental strand, 53471311 - 53471084
Alignment:
Q  114 attttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagata 213  Q
    ||||||||||||||||||   |||||| | ||||||||||||||||||||| || |||||  || ||||||||||||||  |||||||||||||||||||    
T  53471311 attttgaaaggtgtgaagaggggtactctgtactttctacaaggtactacgctaactgattatggtgttgttgcttccttcgagattgaccaagaagata 53471212  T
Q  214 tgacgaagttgtggcatatgaggcttgggcatatgagtgagatggg--tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatct 311  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||| || |||||| ||| ||||||||||| ||||     
T  53471211 tgacgaaattgtggcatatgaggcttgggcatatgagtgagagggggatgcaaattcttgctaaagataatcttctttatggacacaagataaaggatcc 53471112  T
Q  312 tgggttctgtgaacactgtgtttttggg 339  Q
    |||||| | |||||||| || |||||||    
T  53471111 tgggttatctgaacactatgcttttggg 53471084  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 9009089 - 9008945
Alignment:
Q  105 tcaagtgtaattttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgacc 204  Q
    |||||||| ||| | ||||||| ||||| ||||||| |||| ||||||||||||| |||  ||||||||  ||||| |||| ||||||  || ||||||     
T  9009089 tcaagtgtgattctaaaaggtgagaagcgaggtactctttaatttctacaaggtattacactatctgattatgttgctgtttcttccttcgatattgact 9008990  T
Q  205 aagaagatatgacgaagttgtggcatatgaggcttgggcatatga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9008989 aagaagatatgacgaagttgtggcatatgaggcttgggcatatga 9008945  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 79390 - 79488
Alignment:
Q  241 ggcatatgagtgagatggg--tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttg 337  Q
    ||||||||||| ||| |||  || ||||| ||| ||||| |||| |||||||||||||||||||||| ||| || |||||| |||||| |||| |||||    
T  79390 ggcatatgagtcagagggggatgaaaattttggataaaggtgatcttctttgtgggcacaagataaaggattttaggttctctgaacattgtgattttg 79488  T

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