View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8673_low_9 (Length: 324)

Name: NF8673_low_9
Description: NF8673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8673_low_9
NF8673_low_9
[»] chr7 (2 HSPs)
chr7 (168-246)||(3488535-3488613)
chr7 (32-74)||(3489835-3489877)
[»] chr1 (3 HSPs)
chr1 (258-299)||(25635611-25635652)
chr1 (262-305)||(33808091-33808134)
chr1 (262-305)||(33867560-33867603)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 3488613 - 3488535
Alignment:
Q  168 atactttgaaacccttttttcaaaactcaataaaaatcacatatttcaaagaacccaataattttctcacaaaaatcat 246  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  3488613 atactttgaaacccttttttcaaaactcaaacaaaatcacatatttcaaagaacccaataattttctcacaaatatcat 3488535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 3489877 - 3489835
Alignment:
Q  32 catagttactccagaaatcactggtacatcaacacattcctct 74  Q
    |||||||| ||||||||||||||||||||||||||||| ||||    
T  3489877 catagttagtccagaaatcactggtacatcaacacatttctct 3489835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 25635652 - 25635611
Alignment:
Q  258 tttcttgcttgaaataagcctgcaaaaaatgaacaaacacaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25635652 tttcttgcttgaaataagcctgcaaaaaatgaacaaacacaa 25635611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 33808091 - 33808134
Alignment:
Q  262 ttgcttgaaataagcctgcaaaaaatgaacaaacacaatatatc 305  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  33808091 ttgcatgaaataagcctgcaaaaaataaacaaacacaatatatc 33808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 33867560 - 33867603
Alignment:
Q  262 ttgcttgaaataagcctgcaaaaaatgaacaaacacaatatatc 305  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  33867560 ttgcatgaaataagcctgcaaaaaataaacaaacacaatatatc 33867603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University