View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8674_high_1 (Length: 293)
Name: NF8674_high_1
Description: NF8674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8674_high_1 |
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| [»] scaffold0413 (1 HSPs) |
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Alignment Details
Target: scaffold0413 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 8318 - 8583
Alignment:
| Q |
19 |
ttacaaagaaagagaagtagcagaaccaaacctccaagttttcactttaatcactcttacctctctttgagacaatgaattattctccttcatcttctat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8318 |
ttacaaagaaagagaagtagcagaaccaaacctccaagttttcactttaatcactcttacctctct--gagacaatgaattattctccttcatcttctat |
8415 |
T |
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| Q |
119 |
cagtcacaaagcaaaaccagcgtacaaagtttgtttacttcactaagttaaatgtctgccgtgggtccataattgttgtatcaggaagattgaaaaggga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8416 |
cagtcacaaagcaaaaccagcgtacaaagtttgtttactttactaagttaaatgtctgtcgtgggtccataattgttgtatcaggaagattgaaaaggga |
8515 |
T |
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| Q |
219 |
taagtcatagcattttcttatattccattctcatgttttcccaagtccatcgaccaatctctctgcta |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8516 |
taagtcatagcattttcttatattccattctcatgttttcccaagtccatcgaccaatctctatgcta |
8583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 10752191 - 10751925
Alignment:
| Q |
19 |
ttacaaagaaagagaagtagcagaaccaaacctccaagttttcactttaatcactcttacctctctttgagacaatgaattattctccttcatcttctat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10752191 |
ttacaaagaaagagaagtagcagaaccaaacctccaagttttcactttaatcactcttacctctctttgagacaatgaattattctccttcatcttctat |
10752092 |
T |
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| Q |
119 |
cagtcacaaagcaaaaccagcgtacaaagtttgtttacttcactaagttaaatgtctgccgtgggtccataattgttgtatcaggaagattgaaaaggga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10752091 |
cagtcacaaagcaaaaccagcgtacaaagtttgtttacttcactaagtcaaatgtctgccgtgggtccataattgttgtatcaggaagattgaaaagaga |
10751992 |
T |
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| Q |
219 |
taagtcatagcattttcttatattccattctcatgttttcccaagtccatcgaccaatctctctgcta |
286 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
10751991 |
taagtcatagcattttcttatagtccattctcatg-tttcccaagtccatcgaccaatctctatgcta |
10751925 |
T |
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