View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_high_1 (Length: 554)
Name: NF8675_high_1
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 37631960 - 37632361
Alignment:
| Q |
17 |
ctcagtaatgtgaccctcccaccatccatcattgtgataggcatcaacttcatcgccgaatttgaacacccggttagcctccgtcggaagaactggtcgg |
116 |
Q |
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| T |
37631960 |
ctcagtaatgtgaccctcccaccatccatcattgtgataggcatcaacttcatcgccgaatttgaacacccggttagcctccgtcggaagaactggtcgg |
37632059 |
T |
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| Q |
117 |
agctggtgaagcttgagtgattctttgagatgctttgtacctgcttcatcttccatcaagttgtcgtactccaccatgaacttgttgttggcgagacggc |
216 |
Q |
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| T |
37632060 |
agctggtgaagcttgagtgattctttgagatgctttgtacctgcttcatcttccatcaagttgtcgtactccaccatgaacttgttgttggcgagacggc |
37632159 |
T |
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| Q |
217 |
ggacgatcttgccggtgaaccatgagccgcggaaaccgtcgtcgtcggagctgatttcgactaaggtgccgggtttgaagaattcagaggcggcggagga |
316 |
Q |
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| T |
37632160 |
ggacgatcttgccggtgaaccatgagccgcggaaaccgtcgtcgtcggagctgatttcgactaaggtgccgggtttgaagaattcagaggcggcggagga |
37632259 |
T |
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| Q |
317 |
agagcgggtttgggatttgggtgccattggattgtgggattagggtttgtttcacaattgcagaaatggaaaagaagaagagtgaagtgtgaatgagtag |
416 |
Q |
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| T |
37632260 |
agagcgggtttgggatttgggtgccattggattgtgggattagggtttgtttcacaattgcagaaatggaaaagaagaagagtgaagtgtgaatgggtag |
37632359 |
T |
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| Q |
417 |
ga |
418 |
Q |
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| T |
37632360 |
ga |
37632361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 437 - 543
Target Start/End: Original strand, 37632386 - 37632492
Alignment:
| Q |
437 |
ctttgtatagtgttgtttagcgggaattaagaatgtgttcatggctttattatgctatcttaatttcattttcaaatctactgttactaatctacccttg |
536 |
Q |
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| T |
37632386 |
ctttgtatagtgttgtttagcgggaattaagaatgtgttcatggctttattatgctatcttaatttcattttcaaatctactgttactaatctacccttg |
37632485 |
T |
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| Q |
537 |
ttttcat |
543 |
Q |
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| T |
37632486 |
ttttcat |
37632492 |
T |
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