View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_high_3 (Length: 418)
Name: NF8675_high_3
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 44796651 - 44796336
Alignment:
| Q |
19 |
gaaacgtcacaatctttattcttttaatgtcctttattttagcaaggttgggtcagatgttttgataatcattacattaggttgagtgttagacgtgcat |
118 |
Q |
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| T |
44796651 |
gaaacgtcacaatctttattcttttaatgtcctttattttagcaaggttgggtcagatgtgttgataa-----agattaggttgagtgttagacgtgcat |
44796557 |
T |
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| Q |
119 |
cgtttaatannnnnnnacacgtcactcagtttaacatgtgtgtcatggttaagcaaatcatgaaaatctttgctctatattgtttgtacttggcatgcat |
218 |
Q |
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| T |
44796556 |
cgtttaatatttttttacacgtcactcagtttaacatgtgtgtcatggttaagcaaatcatgaaaatctttgctctatattgttggtacttggcatgcat |
44796457 |
T |
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| Q |
219 |
ttgatcgacttggaaatatagtaacaatttgatttttgattagcaagatcgtaggaaaggtccaatcattgatatgataannnnnnngatatggtcatga |
318 |
Q |
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| T |
44796456 |
ttgatcgacttggaaatatagtaacaatttgatttttgattagcaagatcgtaggaaaggtccaatcattgatatgataatttttttgatatggtcatga |
44796357 |
T |
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| Q |
319 |
attaaaacaaaagtttacata |
339 |
Q |
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| T |
44796356 |
attaaaacaaaagtttacata |
44796336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 44796313 - 44796278
Alignment:
| Q |
366 |
tagtacataacctttacaatatttaggcattgatgt |
401 |
Q |
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| T |
44796313 |
tagtacataacctttacaatatttaggcattgatgt |
44796278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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