View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_high_5 (Length: 318)
Name: NF8675_high_5
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 42250361 - 42250124
Alignment:
| Q |
15 |
acattgagtgacatagattcacggtatt-cccaactaatttattggtattggaaaaaggatattcataaaagaaagatggatccaccacgtgtataattc |
113 |
Q |
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| T |
42250361 |
acattgagtgacatagattcacggtatttcccaactaatttattggtattggaaaaaggatattcataaaagaaagatggatccaccacgtgtataattc |
42250262 |
T |
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| Q |
114 |
taattggtcaaaaacacatagacgagaaaagcttcatatataacatcatcatcattatcatccaaatccatcttcattcttgttcagcttcatcgtccct |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42250261 |
taattggtcaaaaacacatagacgagaaaaacttcatatataacatcatcatcattatcatccaaatccatcttcattcttgttcagcttcatcgtccct |
42250162 |
T |
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| Q |
214 |
atctgcatattccttcgcattttccttcacctttgcgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42250161 |
atctgcatattccttcgcattttccttcacctttgcgt |
42250124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 42250008 - 42249953
Alignment:
| Q |
245 |
tttgcgtttcgattcaattcaatttttgataatcatgaacggtttagtcaacaacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42250008 |
tttgcgtttcgattcaattcaatttttgataatcatgaacggtttagtcaacaacg |
42249953 |
T |
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