View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_high_6 (Length: 317)
Name: NF8675_high_6
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 3689109 - 3688983
Alignment:
| Q |
17 |
agttatgaactataccatcatccttattatcattttgattacctgatctaattaaatatatatat------ctatagccttttcccttggttacaatcat |
110 |
Q |
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| T |
3689109 |
agttatgaactataccatcatccttattatcattttgattacctgatcaaattaaatatatatatacatatctatagccttttcccttggttacaatcat |
3689010 |
T |
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| Q |
111 |
tcaaactctgtagaatatcataaactt |
137 |
Q |
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| T |
3689009 |
tcaaactctgtagaatatcataaactt |
3688983 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 3688983 - 3688933
Alignment:
| Q |
225 |
tcaacaatcaaacaaataccaagaaaatgtcataatttggtttttatattt |
275 |
Q |
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| T |
3688983 |
tcaacaaacaaacaaataccaagaaaatgtcataatttgatttttatattt |
3688933 |
T |
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