View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_high_7 (Length: 270)
Name: NF8675_high_7
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2054825 - 2054552
Alignment:
| Q |
1 |
aaagttataataaatattgcaaaaaataaagttgtgataaagtatatatgagtgaatctttgtataaattataataaatattattggcctctannnnnnn |
100 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2054825 |
aaagttataataaacatttcaaaaaataaagttgtgataaagtatatatgagtgaatctttgtataaattataataaatattattggcatctattttttt |
2054726 |
T |
|
| Q |
101 |
cttcctgctaagacaatgttttagagtcctcttaaggtctcaattagtgtttagctaatcctagtcattcataaaaaatttctcaagtagtataaccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2054725 |
cttcctgctaagacaatgttttagagtcctcttaaggtctcaattagtgtttagctaatcctagtcattcataaaaaatttctcaagtagcataaccttt |
2054626 |
T |
|
| Q |
201 |
attttctat-----------------tgaaacaaatttctatgaatgatagttttgatgatgcatttctttttt |
257 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2054625 |
attttctattgatacttttatacatgtgaaacaaatttctatgaatgatagttttgatgatgcatttctttttt |
2054552 |
T |
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