View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_low_10 (Length: 315)
Name: NF8675_low_10
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 16686876 - 16687150
Alignment:
| Q |
19 |
aatcagtgtaatgaaccctaattatggaatctacaagacagaaaatacgaccggtttcgttagttatcaaaagactgtagtggccatggttcctgttgat |
118 |
Q |
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| T |
16686876 |
aatcagtgtaatgaaccctaattatggaatctacaagacagaaaatacgaccggtttcgttagttatcaaaagactgtagtggccatggttcctgttgat |
16686975 |
T |
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| Q |
119 |
gaacaaactttgcctggtcatgcaacaactaatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttg |
218 |
Q |
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| T |
16686976 |
gcacaaactttgcctggtcatgcaacaactaatgtgagtgttactgcgggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttg |
16687075 |
T |
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| Q |
219 |
gagatggatcttttaatatgacaacaaggacaacatttcatgggaaagtgcatttgctgaagattattaagataa |
293 |
Q |
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| T |
16687076 |
gagatggatcttttaatatgacaacaagaacaacatttcatgggaaagtgcatttgctgaagattatcaagataa |
16687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 16619820 - 16619960
Alignment:
| Q |
131 |
cctggtcatgcaacaactaatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatctt |
230 |
Q |
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| T |
16619820 |
cctggtcatagaacaacaaatgtgagtgctactgcaggtcttatgagtgtagagttgatatctaatgataagtttttggtggatgttgcagatggatctt |
16619919 |
T |
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| Q |
231 |
ttaatatgacaacaaggacaacatttcatgggaaagtgcat |
271 |
Q |
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| T |
16619920 |
ttaatttcacagcaaaggcaatatttcatgggaaagtgcat |
16619960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 16644799 - 16644928
Alignment:
| Q |
142 |
aacaactaatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgaca |
241 |
Q |
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|||||||||||||| || ||||||||||||||||| | | || ||||| ||||||| || ||| ||| ||||||| | |||||||||||||| | ||| |
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| T |
16644799 |
aacaactaatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtttttggtggatgttgcacatggatcttttaatctaaca |
16644898 |
T |
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| Q |
242 |
acaaggacaacatttcatgggaaagtgcat |
271 |
Q |
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| T |
16644899 |
gcaaaggcaacacttcgtgggaaagtgcat |
16644928 |
T |
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