View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_low_13 (Length: 240)
Name: NF8675_low_13
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_low_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 51501564 - 51501787
Alignment:
| Q |
17 |
agtcacaaccatctctttgggaaaattccagttgcttcttccttaagccatcttccgccggcatcgtttgtatacaatcgacacctttgcggcaagccac |
116 |
Q |
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| T |
51501564 |
agtcacaaccatctctttgggaaaattccggttgcttcttccttaagccatcttccgccggcatcatttgtatacaatcgacacctttgcggcaagccac |
51501663 |
T |
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| Q |
117 |
ttcagccctgcactcatggtcacatacacaaacatgaataaataggttgagtttggtttggacaaacccaaatatataaatataaaaatactattatact |
216 |
Q |
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| T |
51501664 |
ttcagccctgcactcatagtcacatacacaaacatgaataaataggttgtgtttggtttggacaaacccaaatatataaatataaaaatactattatact |
51501763 |
T |
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| Q |
217 |
taatttgtgcacttcttacccctc |
240 |
Q |
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| T |
51501764 |
taatttgtgcacttcttacccctc |
51501787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 24766029 - 24765812
Alignment:
| Q |
17 |
agtcacaaccatctctttgggaaaattccagttgcttcttccttaagccatcttccgccggcatcgtttgtatacaatcgacacctttgcggcaagccac |
116 |
Q |
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| T |
24766029 |
agtcacaaccatctctttgggaaaattccgattgcttcttccttaagccatcttcagcccgcatcgtttgcatacaatcgacacctttgcggcaagccac |
24765930 |
T |
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| Q |
117 |
ttcagccctgcactcatggtcacatacacaaacatgaataaataggttgagtttggtttggacaaacccaaatatataaatataaaaatactattatact |
216 |
Q |
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| T |
24765929 |
ttcagccctgcactcaaggtcacatacataaacatgaataaataggtagggtttg----tcccaatcccaa--atataaatataaaaatactactatact |
24765836 |
T |
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| Q |
217 |
taatttgtgcacttcttacccctc |
240 |
Q |
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| T |
24765835 |
taatttgggtgctccttacccctc |
24765812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 24750911 - 24750820
Alignment:
| Q |
101 |
ctttgcggcaagccacttcagccctgcactcatggtcacatacacaaacatgaataaataggttgagtttggtttggacaaacccaaatata |
192 |
Q |
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| T |
24750911 |
ctttgcggcaagccacttcaaccctgcactcatggttgcatacacaaacataaacaaataggttggacttggtttggacaaacccaaatata |
24750820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 24750976 - 24750914
Alignment:
| Q |
19 |
tcacaaccatctctttgggaaaattccagttgcttcttccttaagccatcttccgccggcatc |
81 |
Q |
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|||||||| ||||||||||| |||| | ||||||||||||||| ||||||| | ||||||||| |
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| T |
24750976 |
tcacaaccgtctctttgggagaatttcggttgcttcttccttacgccatctacagccggcatc |
24750914 |
T |
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