View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_low_2 (Length: 469)
Name: NF8675_low_2
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 122 - 374
Target Start/End: Original strand, 11894436 - 11894691
Alignment:
| Q |
122 |
caattgcacatgacaatttaaattttttgtaggatacatgacggtttaaaataatcctgacaaaactgttcaagtc---ggttatctatctaataactaa |
218 |
Q |
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| T |
11894436 |
caattgcacatgacaatttaaattttttgtaggatacatgacggtttaaaataatcctgacaaaactgttcaagcccgaggttatctatctaataactaa |
11894535 |
T |
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| Q |
219 |
aatccaaagaaagatggtaaaatttaaaataaaataattccacatgattctttaatgtttcttttagggatcctatttaaaataatggaaatattgttaa |
318 |
Q |
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| T |
11894536 |
aatccaaaaaaatatggtgaaatttaaaataaaataattccacatgattgtttagtgtttcttttagggatcctatttaaaataatggaaatattgttaa |
11894635 |
T |
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| Q |
319 |
tcacggtcataagagcannnnnnngacaaacactctcacaagagcattgttttctt |
374 |
Q |
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| T |
11894636 |
tcactgtcataagagcatttttttgacaaacactctcacaagagcattgttttctt |
11894691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 56 - 282
Target Start/End: Original strand, 11895617 - 11895846
Alignment:
| Q |
56 |
tcgagtcagatttattggttttgccatcaatgtactatcgtatgcatggttaaattnnnnnnnnnncaattgcacatgacaatttaaattttttgtagga |
155 |
Q |
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| T |
11895617 |
tcgagtcagattcattggttttaccaccaatgtactaccctatggatggttaaattaaaaagatat-aattgcacatgacaattcaactctttggtagga |
11895715 |
T |
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| Q |
156 |
tacatgacggttt-aaaataatcctgacaaaactgttcaagtc---ggttatctatctaataactaaaatccaaagaaagatggtaaaatttaaaataaa |
251 |
Q |
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| T |
11895716 |
aacatgacccttttaaaataatcctgacaaaactgtttaagtccgaggttatctatccaataaataaaatccaaagaaagatggtgaaaattaaaataaa |
11895815 |
T |
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| Q |
252 |
ataattccacatgattctttaatgtttcttt |
282 |
Q |
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| T |
11895816 |
ataattccacgtgattgtttaatgtttcttt |
11895846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 11893616 - 11893717
Alignment:
| Q |
10 |
tggacatcaaaatcgagccaaatgctataagattccgtnnnnnnnntcgagtcagatttattggttttgccatcaatgtactatcgtatgcatggttaaa |
109 |
Q |
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| T |
11893616 |
tggacatcaaaatcgagccaaatgctataagattccgtaaaaaaaatgaagtcagatttattggttttgccatcaaagtactatcgtatgcatggttaaa |
11893715 |
T |
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| Q |
110 |
tt |
111 |
Q |
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|| |
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| T |
11893716 |
tt |
11893717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 11898715 - 11898766
Alignment:
| Q |
123 |
aattgcacatgacaatttaaattttttgtaggatacatgacggtttaaaata |
174 |
Q |
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| T |
11898715 |
aattgcacatgacagtttaaattttttgtaggaaacatgtccgtttaaaata |
11898766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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