View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8675_low_3 (Length: 467)
Name: NF8675_low_3
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8675_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 46723321 - 46723578
Alignment:
| Q |
13 |
atctacatcttaatttcattatgtttctaactcccttactaatttagttattaatcatatacttatgtttctcgcacgcttgttcaactagagtatttct |
112 |
Q |
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| T |
46723321 |
atctaaatcttaatttcattatgtttctaactcccttactaatttagttattaatcatatacttatgtttctcgcacgcttgttcaactagagtatttct |
46723420 |
T |
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| Q |
113 |
taatggtcgatatcctgatgaaaacctatgaattatgtgcagcactcaaggacaatgtgctattattatgttcgatgtaactgctcgtttgacatacaaa |
212 |
Q |
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| T |
46723421 |
taatggtcgatatcctgatgaaaacctatgaattatgtgcagcactcaaggacaatgtgctattattatgttcgatgtaactgctcgtttgacatacaaa |
46723520 |
T |
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| Q |
213 |
aatgttccaacatggcacagagatatcactcggtcagttcactgatttcatcaatttt |
270 |
Q |
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| T |
46723521 |
aatgttccgacatggcacggagatatcactcggtcagttcactaatttcatcaatttt |
46723578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 46723572 - 46723726
Alignment:
| Q |
308 |
caatttttcagcttactaatttgggactcttaaattcttgttaataatcagtgtgtgtgagaatatacccattgtcctgtgtggaaacaaggttgatgtg |
407 |
Q |
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| T |
46723572 |
caatttttcagcttactaatttgggactcttaaattcttgttaataatcagtgtgtgtgagaatatacccattgtcctgtgtggaaacaaggttgatgtg |
46723671 |
T |
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| Q |
408 |
aagaatagacagatcaaagcaaagcaagttatatttcacaggaagaataatctac |
462 |
Q |
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| T |
46723672 |
aagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctac |
46723726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 49691017 - 49690952
Alignment:
| Q |
165 |
caatgtgctattattatgttcgatgtaactgctcgtttgacatacaaaaatgttccaacatggcac |
230 |
Q |
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| T |
49691017 |
caatgtgctattataatgtttgatgttactgcccgtctaacatacaaaaatgttcctacctggcac |
49690952 |
T |
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