View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8675_low_4 (Length: 427)

Name: NF8675_low_4
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8675_low_4
NF8675_low_4
[»] chr2 (20 HSPs)
chr2 (120-250)||(3553979-3554109)
chr2 (120-250)||(42225114-42225244)
chr2 (16-78)||(12255689-12255751)
chr2 (16-74)||(40264432-40264490)
chr2 (21-78)||(39121540-39121597)
chr2 (16-63)||(4650492-4650539)
chr2 (12-78)||(4719809-4719875)
chr2 (16-78)||(6905437-6905499)
chr2 (16-78)||(42842035-42842097)
chr2 (322-419)||(12255846-12255943)
chr2 (304-419)||(42224940-42225056)
chr2 (322-359)||(6905318-6905355)
chr2 (321-410)||(39121689-39121778)
chr2 (323-407)||(4650644-4650728)
chr2 (304-359)||(3554167-3554222)
chr2 (304-359)||(4719928-4719983)
chr2 (308-359)||(9617273-9617324)
chr2 (372-419)||(42842258-42842305)
chr2 (372-410)||(40264280-40264318)
chr2 (372-409)||(3554237-3554274)
[»] chr7 (27 HSPs)
chr7 (120-250)||(47399729-47399859)
chr7 (120-246)||(31588581-31588707)
chr7 (16-75)||(21953217-21953276)
chr7 (16-78)||(35505890-35505952)
chr7 (16-78)||(44044585-44044647)
chr7 (16-75)||(9176275-9176334)
chr7 (16-63)||(34642858-34642905)
chr7 (16-63)||(42050356-42050403)
chr7 (16-75)||(46805808-46805867)
chr7 (16-78)||(18783645-18783707)
chr7 (16-78)||(35114402-35114464)
chr7 (16-78)||(42047648-42047710)
chr7 (16-78)||(37315120-37315182)
chr7 (322-419)||(35505698-35505795)
chr7 (322-419)||(44044742-44044839)
chr7 (304-419)||(18783784-18783899)
chr7 (304-419)||(42047456-42047571)
chr7 (373-419)||(21953433-21953479)
chr7 (322-419)||(47399931-47400029)
chr7 (322-419)||(37315276-37315373)
chr7 (307-410)||(34642984-34643090)
chr7 (307-359)||(42050225-42050277)
chr7 (372-419)||(42050160-42050207)
chr7 (304-419)||(46805615-46805730)
chr7 (16-61)||(6613705-6613750)
chr7 (322-419)||(35114211-35114308)
chr7 (81-113)||(31588528-31588560)
[»] chr1 (36 HSPs)
chr1 (120-250)||(20275413-20275543)
chr1 (16-78)||(13497585-13497647)
chr1 (16-78)||(42436714-42436776)
chr1 (12-74)||(43642223-43642285)
chr1 (16-63)||(18411272-18411319)
chr1 (12-63)||(24776504-24776555)
chr1 (16-63)||(28644841-28644888)
chr1 (16-63)||(32523031-32523078)
chr1 (16-75)||(41402652-41402711)
chr1 (16-78)||(32050810-32050872)
chr1 (16-78)||(38294938-38295000)
chr1 (16-63)||(2841439-2841486)
chr1 (16-63)||(38983601-38983648)
chr1 (16-78)||(42807726-42807788)
chr1 (322-419)||(13497393-13497490)
chr1 (322-419)||(42436522-42436619)
chr1 (322-359)||(42807607-42807644)
chr1 (16-61)||(45537899-45537944)
chr1 (16-61)||(49005930-49005975)
chr1 (323-407)||(38983752-38983836)
chr1 (372-419)||(18411078-18411125)
chr1 (372-419)||(28645035-28645082)
chr1 (372-419)||(32523227-32523274)
chr1 (16-61)||(2024076-2024121)
chr1 (76-109)||(23198233-23198266)
chr1 (76-109)||(31774312-31774345)
chr1 (322-359)||(32050676-32050713)
chr1 (323-407)||(2841250-2841334)
chr1 (307-359)||(18411141-18411193)
chr1 (307-359)||(28644967-28645019)
chr1 (307-359)||(32523157-32523209)
chr1 (304-359)||(20275318-20275373)
chr1 (372-410)||(32050624-32050662)
chr1 (372-410)||(41402841-41402879)
chr1 (76-109)||(25549260-25549293)
chr1 (374-419)||(43642429-43642474)
[»] chr8 (27 HSPs)
chr8 (143-250)||(16885501-16885608)
chr8 (16-78)||(13278781-13278843)
chr8 (16-78)||(22514876-22514938)
chr8 (16-78)||(36895593-36895655)
chr8 (16-78)||(40558459-40558521)
chr8 (16-63)||(6417630-6417677)
chr8 (16-75)||(12500763-12500822)
chr8 (16-63)||(18384660-18384707)
chr8 (16-75)||(39621153-39621212)
chr8 (16-78)||(16429210-16429272)
chr8 (16-78)||(33442350-33442412)
chr8 (322-419)||(13278938-13279035)
chr8 (322-419)||(22514684-22514781)
chr8 (322-419)||(40558267-40558364)
chr8 (304-419)||(16429018-16429133)
chr8 (321-419)||(29088339-29088437)
chr8 (307-359)||(6417499-6417551)
chr8 (307-359)||(18384786-18384838)
chr8 (372-419)||(6417435-6417482)
chr8 (304-410)||(16885659-16885766)
chr8 (372-419)||(18384856-18384903)
chr8 (372-419)||(33442190-33442237)
chr8 (76-109)||(10628363-10628396)
chr8 (76-109)||(21119214-21119247)
chr8 (322-419)||(36895749-36895846)
chr8 (372-419)||(12500929-12500976)
chr8 (76-109)||(40637584-40637617)
[»] chr4 (25 HSPs)
chr4 (120-217)||(25888479-25888576)
chr4 (16-78)||(9767624-9767686)
chr4 (16-78)||(27072080-27072142)
chr4 (16-63)||(5944913-5944960)
chr4 (16-78)||(4944234-4944296)
chr4 (16-78)||(7510505-7510567)
chr4 (16-78)||(27152170-27152232)
chr4 (322-419)||(27071888-27071985)
chr4 (322-410)||(9767781-9767869)
chr4 (323-419)||(27023720-27023816)
chr4 (12-59)||(27023675-27023722)
chr4 (322-420)||(25888296-25888394)
chr4 (322-419)||(4944043-4944140)
chr4 (307-359)||(5944782-5944834)
chr4 (16-63)||(36352253-36352300)
chr4 (76-109)||(1242545-1242578)
chr4 (322-359)||(27152039-27152076)
chr4 (322-419)||(34802899-34802996)
chr4 (322-355)||(48946176-48946209)
chr4 (12-53)||(48946279-48946320)
chr4 (372-419)||(5944719-5944766)
chr4 (322-409)||(7510329-7510416)
chr4 (373-419)||(36352453-36352499)
chr4 (322-359)||(7863796-7863833)
chr4 (322-359)||(36352397-36352434)
[»] chr5 (26 HSPs)
chr5 (120-216)||(22385944-22386040)
chr5 (16-78)||(22720333-22720395)
chr5 (16-78)||(25337113-25337175)
chr5 (12-77)||(28968573-28968638)
chr5 (15-63)||(16479227-16479275)
chr5 (16-75)||(5811593-5811652)
chr5 (16-78)||(1211707-1211769)
chr5 (16-78)||(16476635-16476697)
chr5 (16-78)||(23106562-23106624)
chr5 (16-78)||(36788716-36788778)
chr5 (322-419)||(22720492-22720589)
chr5 (304-419)||(16476443-16476558)
chr5 (304-419)||(23106701-23106816)
chr5 (304-419)||(28968718-28968833)
chr5 (16-58)||(22496036-22496078)
chr5 (307-359)||(16479096-16479148)
chr5 (304-359)||(1211848-1211903)
chr5 (372-419)||(16479031-16479078)
chr5 (16-61)||(1597730-1597775)
chr5 (326-419)||(25336922-25337015)
chr5 (16-61)||(40831498-40831543)
chr5 (304-355)||(22386120-22386171)
chr5 (323-410)||(22496175-22496262)
chr5 (16-61)||(39564256-39564301)
chr5 (372-420)||(22386189-22386237)
chr5 (372-420)||(36788923-36788971)
[»] chr6 (12 HSPs)
chr6 (16-78)||(14181004-14181066)
chr6 (16-78)||(14176468-14176530)
chr6 (16-75)||(18902185-18902244)
chr6 (16-75)||(19421614-19421673)
chr6 (16-78)||(4270649-4270711)
chr6 (322-419)||(14180812-14180909)
chr6 (304-419)||(4270788-4270903)
chr6 (322-419)||(22511115-22511212)
chr6 (322-359)||(14176336-14176373)
chr6 (322-419)||(18902326-18902423)
chr6 (322-410)||(19421444-19421532)
chr6 (383-419)||(14176276-14176312)
[»] chr3 (28 HSPs)
chr3 (16-78)||(10121718-10121780)
chr3 (16-78)||(30107640-30107702)
chr3 (16-78)||(35349841-35349903)
chr3 (16-78)||(38189579-38189641)
chr3 (16-78)||(45579149-45579211)
chr3 (21-78)||(1002054-1002111)
chr3 (21-78)||(26705158-26705215)
chr3 (16-75)||(47333470-47333529)
chr3 (16-78)||(43845851-43845913)
chr3 (16-78)||(54611207-54611269)
chr3 (305-410)||(23303766-23303871)
chr3 (322-419)||(35349998-35350095)
chr3 (322-410)||(1002206-1002294)
chr3 (12-75)||(33956228-33956291)
chr3 (16-61)||(22398843-22398888)
chr3 (321-410)||(26705309-26705398)
chr3 (322-419)||(43845660-43845757)
chr3 (321-410)||(45579279-45579367)
chr3 (16-59)||(33954959-33955002)
chr3 (372-419)||(33956443-33956490)
chr3 (16-61)||(4065748-4065793)
chr3 (76-109)||(7814409-7814442)
chr3 (16-61)||(37965850-37965895)
chr3 (322-410)||(38189737-38189826)
chr3 (322-419)||(54611016-54611113)
chr3 (372-419)||(10121924-10121971)
chr3 (16-61)||(28417411-28417456)
chr3 (372-409)||(47333657-47333694)
[»] scaffold1788 (2 HSPs)
scaffold1788 (16-78)||(449-511)
scaffold1788 (322-419)||(606-703)
[»] scaffold0009 (3 HSPs)
scaffold0009 (16-63)||(197957-198004)
scaffold0009 (307-359)||(198083-198135)
scaffold0009 (372-419)||(198153-198200)
[»] scaffold0007 (2 HSPs)
scaffold0007 (16-78)||(12135-12197)
scaffold0007 (304-419)||(11943-12058)
[»] scaffold0088 (2 HSPs)
scaffold0088 (16-75)||(11837-11896)
scaffold0088 (372-419)||(11646-11693)
[»] scaffold1289 (1 HSPs)
scaffold1289 (16-61)||(1226-1271)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 3553979 - 3554109
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacattc 219  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  3553979 ttgttgctatatgtttatgatgactctgctctagaactgtgttaggatcatggaagagtgttatttgagctaatatttcattttgtgtcactttacatgc 3554078  T
Q  220 tatctgtcaagctcaatttgtgatctatgag 250  Q
    |||||||||||||||||||||||||||||||    
T  3554079 tatctgtcaagctcaatttgtgatctatgag 3554109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 42225244 - 42225114
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |    
T  42225244 ttgttgctatatgttcatgatgactctgctctagaactgtgttaggatcatggaagagtgttatttgagctaatatttcattttgtgtcattttacatgc 42225145  T
Q  220 tatctgtcaagctcaatttgtgatctatgag 250  Q
    |||||||||||||||||||||||||||||||    
T  42225144 tatctgtcaagctcaatttgtgatctatgag 42225114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 12255689 - 12255751
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  12255689 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 12255751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40264490 - 40264432
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcac 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  40264490 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgtataaacgcac 40264432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 39121540 - 39121597
Alignment:
Q  21 cctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  39121540 cctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 39121597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 4650492 - 4650539
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4650492 cattccctcttggagctgctccttgaacttgtaaatcaatgttcttcg 4650539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 4719809 - 4719875
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||| || |||| ||||||||||||||    
T  4719809 acatcattctctcttagagttgctccttgaacttgtagatcaatattgttcgtatagacgcaccaat 4719875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 6905499 - 6905437
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||| ||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  6905499 cattctctcttagagctgctccttgaacttgtagatcaatattgttcgtatagacgcaccaat 6905437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 42842035 - 42842097
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||| ||||    
T  42842035 cattccctcttggagttgctccttgaacttgtagaccagtgttcttcgtatagacgcaacaat 42842097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 12255846 - 12255943
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||| ||||||||||||||||||||||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  12255846 tttcgattcattagaaccaactccatgaaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 12255943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 42225056 - 42224940
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactcc-atgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaacc 402  Q
    |||||||||| ||||   |||||||||||||||||||||||| ||| ||||||||||            |||||||| ||||||||||||||||||||||    
T  42225056 caatatgaaaaaagtacctttcgatccattagaaccaactcccatggaaaatggtagttttttatttttgtagtcttgaacaaaccaagcacgaacaacc 42224957  T
Q  403 ctcacaactgatgtcca 419  Q
    ||||||||  |||||||    
T  42224956 ctcacaaccaatgtcca 42224940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 6905355 - 6905318
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6905355 tttcgatccattagaaccaactccatgaaaaatggtag 6905318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 39121689 - 39121778
Alignment:
Q  321 atttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||| ||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||    
T  39121689 atttcgatacattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaac 39121778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 4650644 - 4650728
Alignment:
Q  323 ttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcac 407  Q
    |||||||||||||||||||||||||  ||||||||||            |||||||| |||||||||||||||||||||||||||    
T  4650644 ttcgatccattagaaccaactccatagaaaatggtagttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcac 4650728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 3554167 - 3554222
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    |||||||||| ||||   ||||||||||||||||||||||||||| ||||||||||    
T  3554167 caatatgaaaaaagtacctttcgatccattagaaccaactccatggaaaatggtag 3554222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 4719928 - 4719983
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    |||||||||| |||| | ||||||| ||||||||| ||||||||||||||||||||    
T  4719928 caatatgaaaaaagtaactttcgattcattagaactaactccatgaaaaatggtag 4719983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 9617324 - 9617273
Alignment:
Q  308 atgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    |||||| ||||  |||| |||||||||||||||||| |||||||||||||||    
T  9617324 atgaaaaaagtacatttggatccattagaaccaacttcatgaaaaatggtag 9617273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 42842258 - 42842305
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  42842258 gtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 42842305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 40264318 - 40264280
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  40264318 gtagtcttgagcaaaccaagcacgaacaaccctcacaac 40264280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 3554237 - 3554274
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaa 409  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  3554237 gtagtcttgaacaaatcaagcacgaacaaccctcacaa 3554274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 47399729 - 47399859
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacattc 219  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  47399729 ttgttgctatatgtttatgatgactgtgctctagaactgtgttaggatcatggaagagtgttatttgagctaatatttcattttgtgtcactttacatgc 47399828  T
Q  220 tatctgtcaagctcaatttgtgatctatgag 250  Q
    |||||||||||||||||||||||||||||||    
T  47399829 tatctgtcaagctcaatttgtgatctatgag 47399859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 31588581 - 31588707
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |    
T  31588581 ttgttgctatatgttcatgatgactctgctctagaactgtgttaggatcatggaagagtgttatttgagctaatattttattttgtgtcactttacatgc 31588680  T
Q  220 tatctgtcaagctcaatttgtgatcta 246  Q
    |||||   |||||||||||||||||||    
T  31588681 tatcttggaagctcaatttgtgatcta 31588707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 21953217 - 21953276
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  21953217 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgtataaacgcacc 21953276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 35505952 - 35505890
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  35505952 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 35505890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 44044585 - 44044647
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  44044585 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 44044647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 9176275 - 9176334
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  9176275 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgaataaacgcacc 9176334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 34642858 - 34642905
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34642858 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 34642905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 42050403 - 42050356
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42050403 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 42050356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 46805867 - 46805808
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  46805867 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtataaacgcacc 46805808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 18783645 - 18783707
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  18783645 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 18783707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 35114464 - 35114402
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  35114464 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 35114402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 42047710 - 42047648
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  42047710 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 42047648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 37315120 - 37315182
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||| ||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  37315120 cattctctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 37315182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 35505795 - 35505698
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  35505795 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 35505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 44044742 - 44044839
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||| ||||||||||||||||||||||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  44044742 tttcgattcattagaaccaactccatgaaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 44044839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 18783784 - 18783899
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  18783784 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 18783883  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  18783884 tcacaaccaatgtcca 18783899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 42047571 - 42047456
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  42047571 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 42047472  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  42047471 tcacaaccaatgtcca 42047456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 21953433 - 21953479
Alignment:
Q  373 tagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  21953433 tagtcttcaacaaaccaagcacgaacaaccctcacaaccaatgtcca 21953479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 47399931 - 47400029
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnn-gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||| |||||||||||||||||||||||||||||||||             |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  47399931 tttcaatccattagaaccaactccatgaaaaatggtagtttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 47400029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 37315276 - 37315373
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  37315276 tttcgatcaattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 37315373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 410
Target Start/End: Original strand, 34642984 - 34643090
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnn---gtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||               |||||||| |||||||||||||||||||||||    
T  34642984 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtagtttttttttatttttgtagtcttgaacaaaccaagcacgaacaaccc 34643083  T
Q  404 tcacaac 410  Q
    |||||||    
T  34643084 tcacaac 34643090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 42050277 - 42050225
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  42050277 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtag 42050225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 42050207 - 42050160
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  42050207 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 42050160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 46805730 - 46805615
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| ||||  |||||||||||||||||||||||||||  |||||| |||            |||||||| |||||||||| |||||||||||     
T  46805730 caatatgaaaaaagtacatttcgatccattagaaccaactccatagaaaatgatagttttttctttttgtagtcttgaacaaaccaaacacgaacaacca 46805631  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  46805630 tcacaaccaatgtcca 46805615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 6613750 - 6613705
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||    
T  6613750 cattccctcttagtgctgctccttgaacttgtagaacaatgttctt 6613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 35114308 - 35114211
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||||||||||||| ||||||||||            ||||| || | ||||||||||||||||||||||||||||  |||||||    
T  35114308 tttcgatcaattagaaccaactccatggaaaatggtagttttttatttttgtagttttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 35114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 31588528 - 31588560
Alignment:
Q  81 tttttatatgttgttgtgtttgataaactttga 113  Q
    |||||||||||||||||||||||||||||||||    
T  31588528 tttttatatgttgttgtgtttgataaactttga 31588560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 20275543 - 20275413
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacattc 219  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |    
T  20275543 ttgttgatatatgttcatgatgactctgctctagaactgtgttaggatcatggaagagtgttatttgagctaatatttcattttgtatcactttacatgc 20275444  T
Q  220 tatctgtcaagctcaatttgtgatctatgag 250  Q
    |||||||||||||||||||||||||||||||    
T  20275443 tatctgtcaagctcaatttgtgatctatgag 20275413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 13497647 - 13497585
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  13497647 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 13497585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 42436776 - 42436714
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  42436776 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 42436714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 43642223 - 43642285
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcac 74  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  43642223 acatcattcccttttggagctgctccttgaacttgtagatcaatgttcttcgtataaacgcac 43642285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18411319 - 18411272
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18411319 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 18411272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 24776555 - 24776504
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24776555 acatcattcccttttggagctgctccttgaacttgtagatcaatgttcttcg 24776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 28644841 - 28644888
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28644841 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 28644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 32523031 - 32523078
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32523031 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 32523078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 41402652 - 41402711
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  41402652 cattccctcttggagctgctcattgaacttgtagatcaatgttcttcgtataaacgcacc 41402711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 32050872 - 32050810
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||    
T  32050872 cattccctcttggagttgctccttgaacttatagatcaatgttcttcgtatagacacaccaat 32050810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 38295000 - 38294938
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||||||    
T  38295000 cattccctcttggagttgctccttgaacttgtagatcaattttcttcttatagacgcaccaat 38294938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 2841486 - 2841439
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2841486 cattccctcttggagctgctccttgaacttgtaaatcaatgttcttcg 2841439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 38983601 - 38983648
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38983601 cattccctcttggagctgctccttgaacttgtaaatcaatgttcttcg 38983648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 42807788 - 42807726
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||| ||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  42807788 cattctctcttagagctgctccttgaacttgtagatcaatattgttcgtatagacgcaccaat 42807726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 13497490 - 13497393
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  13497490 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 13497393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 42436619 - 42436522
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  42436619 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 42436522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 42807644 - 42807607
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42807644 tttcgatccattagaaccaactccatgaaaaatggtag 42807607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 45537944 - 45537899
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  45537944 cattccctcttagtgctgctccttgaacttgtagatcaatgttctt 45537899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 49005975 - 49005930
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  49005975 cattccctcttagtgctgctccttgaacttgtagatcaatgttctt 49005930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 38983752 - 38983836
Alignment:
Q  323 ttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcac 407  Q
    |||||||||||||||||||||||||  ||||||||||            |||||||| |||||||||||||||||||||||||||    
T  38983752 ttcgatccattagaaccaactccatagaaaatggtagttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcac 38983836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 18411125 - 18411078
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  18411125 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 18411078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 28645035 - 28645082
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  28645035 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 28645082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 32523227 - 32523274
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  32523227 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 32523274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 2024121 - 2024076
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  2024121 cattccctcttagtgttgctccttgaacttgtagatcaatgttctt 2024076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 23198233 - 23198266
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||||||||||||||||||||    
T  23198233 aatgctttttatatgttgttgtgtttgataaact 23198266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 31774345 - 31774312
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||||||||||||||||||||    
T  31774345 aatgctttttatatgttgttgtgtttgataaact 31774312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 32050713 - 32050676
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32050713 tttcgatccattagaaccaactccatggaaaatggtag 32050676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 2841334 - 2841250
Alignment:
Q  323 ttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcac 407  Q
    |||||||||||||||||||||||||  |||||| |||            |||||||| |||||||||||||||||||||||||||    
T  2841334 ttcgatccattagaaccaactccatagaaaatgatagttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcac 2841250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 18411193 - 18411141
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| ||||  |||||||||||||||||||||||||||  ||||||||||    
T  18411193 tatgaaaaaagtccatttcgatccattagaaccaactccatagaaaatggtag 18411141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 28644967 - 28645019
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| ||||  |||||||||||||||||||||||||||  ||||||||||    
T  28644967 tatgaaaaaagtccatttcgatccattagaaccaactccatagaaaatggtag 28645019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 32523157 - 32523209
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| ||||  |||||||||||||||||||||||||||  ||||||||||    
T  32523157 tatgaaaaaagtccatttcgatccattagaaccaactccatagaaaatggtag 32523209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 20275373 - 20275318
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    |||||||||| ||||   ||||||||||||||||||||||||| | ||||||||||    
T  20275373 caatatgaaaaaagtacctttcgatccattagaaccaactccacggaaaatggtag 20275318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 32050662 - 32050624
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  32050662 gtagtcttgaccaaaccaagcacgaacaaccctcacaac 32050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 41402841 - 41402879
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  41402841 gtagtcttgaacaaaccaagcacgaacaaccatcacaac 41402879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 25549293 - 25549260
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||| ||||||||||||||||    
T  25549293 aatgctttttatatgttcttgtgtttgataaact 25549260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 43642429 - 43642474
Alignment:
Q  374 agtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||| |||||||||| |||||||||||||||||||  |||||||    
T  43642429 agtcttgaacaaaccaaacacgaacaaccctcacaaccaatgtcca 43642474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 16885501 - 16885608
Alignment:
Q  143 ctctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacattctatctgtcaagctcaatttgtga 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16885501 ctctgctctagaactgtgttaggatcatggaagagtgttatttgagctaatatttcattttgtgtcactttacatgctatctgtcaagctcaatttgtga 16885600  T
Q  243 tctatgag 250  Q
    ||||||||    
T  16885601 tctatgag 16885608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 13278781 - 13278843
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  13278781 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 13278843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 22514938 - 22514876
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22514938 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 22514876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 36895593 - 36895655
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  36895593 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 36895655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 40558521 - 40558459
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  40558521 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 40558459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 6417677 - 6417630
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6417677 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 6417630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12500763 - 12500822
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  12500763 cattccctcttgaagctgctccttgaacttgtagatcaatgttcttcgtataaacgcacc 12500822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 18384660 - 18384707
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18384660 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 18384707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 39621153 - 39621212
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  39621153 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtataaacgcacc 39621212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 16429272 - 16429210
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  16429272 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 16429210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 33442412 - 33442350
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  33442412 catttcctcttagagttgctccttgaacttgtagatcaatgttcttcgtatagatgcaccaat 33442350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 13278938 - 13279035
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  13278938 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 13279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 22514781 - 22514684
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  22514781 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 22514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 40558364 - 40558267
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  40558364 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 40558267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 16429133 - 16429018
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  16429133 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 16429034  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  16429033 tcacaaccaatgtcca 16429018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 419
Target Start/End: Original strand, 29088339 - 29088437
Alignment:
Q  321 atttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||||||||||||||||||||||| |||||| |||            |||||||| ||||||||||||||||| ||||||||||||  |||||||    
T  29088339 atttcgatccattagaaccaactccatggaaaatgatagttttttatttttgtagtcttgaacaaaccaagcacgaataaccctcacaaccaatgtcca 29088437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 6417551 - 6417499
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  6417551 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtag 6417499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 18384786 - 18384838
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  18384786 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtag 18384838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 6417482 - 6417435
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  6417482 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 6417435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 16885659 - 16885766
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnn-gtagtcttcaacaaaccaagcacgaacaacc 402  Q
    |||||||||| ||||   ||||||||||||||||||||||||||| ||||||||||             |||||||  ||||||||||||||||||||||    
T  16885659 caatatgaaaaaagtacctttcgatccattagaaccaactccatggaaaatggtagtttttttatttttgtagtctcgaacaaaccaagcacgaacaacc 16885758  T
Q  403 ctcacaac 410  Q
    ||||||||    
T  16885759 ctcacaac 16885766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 18384856 - 18384903
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  18384856 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 18384903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 33442237 - 33442190
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  33442237 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 33442190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 10628396 - 10628363
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||||||||||||||||||||    
T  10628396 aatgctttttatatgttgttgtgtttgataaact 10628363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 21119247 - 21119214
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||||||||||||||||||||    
T  21119247 aatgctttttatatgttgttgtgtttgataaact 21119214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 36895749 - 36895846
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||| ||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  36895749 tttcgatctattagaacaaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 36895846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 12500929 - 12500976
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  12500929 gtagtcttgagcaaaccaagcacgaacaaccctcacaaccaatgtcca 12500976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 40637617 - 40637584
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||| ||||||||||||||||    
T  40637617 aatgctttttatatgttcttgtgtttgataaact 40637584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 25888576 - 25888479
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttacat 217  Q
    |||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25888576 ttgttgctatatgttcatcatgaccctgctctagaaatgtgttaggatcatggaagagtgttatttgagctaatatttcattttgtgtcactttacat 25888479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 9767624 - 9767686
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  9767624 cattccctcttggagttgctccttggacttgtagatcaatgttcttcgtatagacgcaccaat 9767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 27072142 - 27072080
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  27072142 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 27072080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 5944960 - 5944913
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5944960 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 5944913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 4944296 - 4944234
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  4944296 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 4944234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 7510567 - 7510505
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  7510567 cattccctcttggagttgctccttggacttgtagatcaatgttcttcgtgtagacgcaccaat 7510505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 27152232 - 27152170
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  27152232 cattccctcttagagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 27152170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 27071985 - 27071888
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  27071985 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 27071888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 410
Target Start/End: Original strand, 9767781 - 9767869
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    ||||||||||||||||||||||||||| |||||| |||            |||||||| ||||||||||||||||||||||||||||||    
T  9767781 tttcgatccattagaaccaactccatggaaaatgatagttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcacaac 9767869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 27023720 - 27023816
Alignment:
Q  323 ttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||||||||||||||||||||  ||||||||||            |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  27023720 ttcgatccattagaaccaactccatagaaaatggtagttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 27023816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 27023675 - 27023722
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatcaatgttc 59  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  27023675 acatcatttcctcttagagctgctccttgaacttgtagatcaatgttc 27023722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 420
Target Start/End: Complemental strand, 25888394 - 25888296
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtccat 420  Q
    |||||||| |||||||||||||||||| |||||| |||            |||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  25888394 tttcgatctattagaaccaactccatggaaaatgatagttttttatttttgtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtccat 25888296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 4944140 - 4944043
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  4944140 tttcgatcaattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 4944043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 5944834 - 5944782
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  5944834 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtag 5944782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 36352253 - 36352300
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||||||||    
T  36352253 cattctctcttggagctactccttgaacttgtagatcgatgttcttcg 36352300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 1242578 - 1242545
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||||||||||||||||||||    
T  1242578 aatgctttttatatgttgttgtgtttgataaact 1242545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 27152076 - 27152039
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  27152076 tttcgatccattagaaccaactccatggaaaatggtag 27152039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 34802996 - 34802899
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||  ||||||||||            ||| |||| ||||||||||||||||| ||||||||||||  |||||||    
T  34802996 tttcgatccattagaaccaactccatagaaaatggtagttttttatttttgtattcttgaacaaaccaagcacgaaaaaccctcacaaccaatgtcca 34802899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 48946209 - 48946176
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatg 355  Q
    ||||||||||||||||||||||||||||||||||    
T  48946209 tttcgatccattagaaccaactccatgaaaaatg 48946176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 48946320 - 48946279
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatca 53  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  48946320 acatcattccctcttagagttgctccttgaacttgtagatca 48946279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 5944766 - 5944719
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||||||||||||||| |||||||||  |||||||    
T  5944766 gtagtcttgaacaaaccaagcacgaacaatcctcacaaccaatgtcca 5944719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 409
Target Start/End: Complemental strand, 7510416 - 7510329
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaa 409  Q
    ||||||||||||||||| ||||||||| |||||| |||            |||||||| |||||||||| ||||||||||||||||||    
T  7510416 tttcgatccattagaactaactccatggaaaatgatagttttttatttttgtagtcttgaacaaaccaaacacgaacaaccctcacaa 7510329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 36352453 - 36352499
Alignment:
Q  373 tagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||| ||||||||||| ||||||||||||||||||  |||||||    
T  36352453 tagtcttgaacaaaccaagtacgaacaaccctcacaaccaatgtcca 36352499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 7863833 - 7863796
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7863833 tttcaatccattagaaccaactccatggaaaatggtag 7863796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 36352397 - 36352434
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  36352397 tttcgatccattagaaccaactccattgaaaatggtag 36352434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 22385944 - 22386040
Alignment:
Q  120 ttgttgctatatgttcatgatgactctgctctagaacagtgttaggatcatggaagagtgttatttgagccaatatttcattttgtgtcactttaca 216  Q
    ||||||||| |||||||||||||||||||| ||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  22385944 ttgttgctacatgttcatgatgactctgctttagaactatgttaggatcatggaagaatgttatttgagctaatatttcattttgtgtcactttaca 22386040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 22720333 - 22720395
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  22720333 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 22720395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 25337175 - 25337113
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  25337175 cattccctcttggagttgcttcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 25337113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 28968573 - 28968638
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaa 77  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||    
T  28968573 acatcattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaa 28968638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 16479275 - 16479227
Alignment:
Q  15 tcattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16479275 tcattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 16479227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 5811593 - 5811652
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  5811593 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtataaacgcacc 5811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 1211707 - 1211769
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  1211707 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 1211769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 16476697 - 16476635
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  16476697 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 16476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 23106562 - 23106624
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  23106562 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 23106624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 36788716 - 36788778
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    |||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  36788716 cattccctcttgcagttgctccttgaacttgtagatcaatattcttcgtatagacgcaccaat 36788778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 22720492 - 22720589
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||| ||||||||||||||||||||||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  22720492 tttcgattcattagaaccaactccatgaaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 22720589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 16476558 - 16476443
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  16476558 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 16476459  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  16476458 tcacaaccaatgtcca 16476443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 23106701 - 23106816
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  23106701 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 23106800  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  23106801 tcacaaccaatgtcca 23106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 28968718 - 28968833
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | ||  |||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  28968718 caatatgaaaaaggtacatttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 28968817  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  28968818 tcacaaccaatgtcca 28968833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 22496036 - 22496078
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgtt 58  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  22496036 cattccctcttggagctgctccttgaatttgtagatcaatgtt 22496078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 16479148 - 16479096
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  16479148 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtag 16479096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 1211848 - 1211903
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||    
T  1211848 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtag 1211903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 16479078 - 16479031
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  16479078 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 16479031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 1597730 - 1597775
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  1597730 cattccctcttagtgttgctccttgaacttgtagatcaatgttctt 1597775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 419
Target Start/End: Complemental strand, 25337015 - 25336922
Alignment:
Q  326 gatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||| ||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  25337015 gatccattagaacaaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 25336922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 40831543 - 40831498
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  40831543 cattccctcttagtgttgctccttgaacttgtagatcaatgttctt 40831498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 22386120 - 22386171
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatg 355  Q
    |||||||||| ||||   ||||||||||||||||||||||||||| ||||||    
T  22386120 caatatgaaaaaagtatctttcgatccattagaaccaactccatgtaaaatg 22386171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 22496175 - 22496262
Alignment:
Q  323 ttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||||||||||||||||||||  |||||| |||            |||||||| |||||||||||||||||||||| |||||||    
T  22496175 ttcgatccattagaaccaactccatagaaaatgatagtttttcatttttgtagtcttgaacaaaccaagcacgaacaaccatcacaac 22496262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 39564256 - 39564301
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | |||||||||||||||| ||||||||| |||||    
T  39564256 cattccctcttagtgctgctccttgaacttttagatcaatattctt 39564301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 22386189 - 22386237
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtccat 420  Q
    ||| |||| ||||||||||||| ||||||||||||||||  ||||||||    
T  22386189 gtattcttgaacaaaccaagcatgaacaaccctcacaaccaatgtccat 22386237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 36788923 - 36788971
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtccat 420  Q
    |||||||| | ||||||||||| ||||||||||||||||  ||||||||    
T  36788923 gtagtctttaccaaaccaagcaggaacaaccctcacaaccaatgtccat 36788971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 14181066 - 14181004
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  14181066 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 14181004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 14176530 - 14176468
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  14176530 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 14176468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 18902185 - 18902244
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  18902185 cattccctcttggagctgctccttgaacttgtagaccaatgttcttcgtataaacgcacc 18902244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 19421673 - 19421614
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  19421673 cattccctcttggagctgctccttgaacttgtagaccaatgttcttcgtataaacgcacc 19421614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 4270649 - 4270711
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  4270649 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 4270711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 14180909 - 14180812
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  14180909 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 14180812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 4270788 - 4270903
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  4270788 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 4270887  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  4270888 tcacaaccaatgtcca 4270903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 22511212 - 22511115
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||  ||||||||||            |||||||| |||||||||||||||||||||| ||| |||| |||||||    
T  22511212 tttcgatccattagaaccaactccatagaaaatggtagttttttctttttgtagtcttgaacaaaccaagcacgaacaaccatcataactaatgtcca 22511115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 14176373 - 14176336
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14176373 tttcgatccattagaaccaactccatggaaaatggtag 14176336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 18902326 - 18902423
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||  ||||||||||            |||||||| ||||||||||||| |||||||| |||||||  |||||||    
T  18902326 tttcgatccattagaaccaactccatataaaatggtagttttttctttttgtagtcttgaacaaaccaagcatgaacaaccatcacaaccaatgtcca 18902423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 19421532 - 19421444
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    ||||||||||||||||||||||||||  ||||||||||            |||||||| ||||||||||||| |||||||| |||||||    
T  19421532 tttcgatccattagaaccaactccatataaaatggtagttttttctttttgtagtcttgaacaaaccaagcatgaacaaccatcacaac 19421444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 14176312 - 14176276
Alignment:
Q  383 caaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||||  |||||||    
T  14176312 caaaccaagcacgaacaaccctcacaaccaatgtcca 14176276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 10121718 - 10121780
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10121718 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 10121780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 30107702 - 30107640
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  30107702 cattctctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 30107640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 35349841 - 35349903
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  35349841 cattccctcttggagttgttccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 35349903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 38189579 - 38189641
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||    
T  38189579 cattccctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacacaccaat 38189641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 45579149 - 45579211
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  45579149 cattccctcttggagctgctccttgaacttgttgatcaatattcttcgtatagacgcaccaat 45579211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1002054 - 1002111
Alignment:
Q  21 cctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  1002054 cctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 1002111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 26705158 - 26705215
Alignment:
Q  21 cctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  26705158 cctcttggagttgctccttgaacttgtagatcaatgttcttcgtatagacgcaccaat 26705215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 47333470 - 47333529
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  47333470 cattccctcttggaactgctccttgaacttgtagatcaatgttcttcgtataaacgcacc 47333529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 43845913 - 43845851
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  43845913 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 43845851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 54611269 - 54611207
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  54611269 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 54611207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 23303871 - 23303766
Alignment:
Q  305 aatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccct 404  Q
    ||||||||| ||||  ||||| |||||||||||||||||||||| ||||||||||            |||||||| ||||||||||||| ||||||||||    
T  23303871 aatatgaaaaaagtacatttcaatccattagaaccaactccatggaaaatggtagtcttttatttttgtagtcttgaacaaaccaagcatgaacaaccct 23303772  T
Q  405 cacaac 410  Q
    ||||||    
T  23303771 cacaac 23303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 35349998 - 35350095
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  35349998 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 35350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 410
Target Start/End: Original strand, 1002206 - 1002294
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    ||||||||||||||||||||||||||||||||||||||            |||||||| | ||||||||||| ||||||||||||||||    
T  1002206 tttcgatccattagaaccaactccatgaaaaatggtagttttttatttttgtagtcttgaccaaaccaagcatgaacaaccctcacaac 1002294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 33956228 - 33956291
Alignment:
Q  12 acatcattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||| | ||| |||||||    
T  33956228 acatcattccctcttggtgttgctccttgaacttgtaaatcaatgttctttgtataaacgcacc 33956291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 22398888 - 22398843
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  22398888 cattccctcttagtgctgctccttgaacttgtagatcaatgttctt 22398843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 26705309 - 26705398
Alignment:
Q  321 atttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||| ||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||    
T  26705309 atttcgatacattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaac 26705398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 43845757 - 43845660
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  43845757 tttcgatcaattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 43845660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 45579279 - 45579367
Alignment:
Q  321 atttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    |||||||||||||||||||||||||||| ||||||||||            ||||| || ||||||||||||||||||||||||||||||    
T  45579279 atttcgatccattagaaccaactccatg-aaaatggtagttttttatttttgtagttttgaacaaaccaagcacgaacaaccctcacaac 45579367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 33954959 - 33955002
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttc 59  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  33954959 cattccctcttggtgttgctccttgaacttgtagatcaatgttc 33955002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 33956443 - 33956490
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  33956443 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 33956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 4065748 - 4065793
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||    
T  4065748 cattccctcttagtgctgctccttgaacttgtagaacaatgttctt 4065793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 7814442 - 7814409
Alignment:
Q  76 aatgctttttatatgttgttgtgtttgataaact 109  Q
    ||||||||||||||||||||||||||||||||||    
T  7814442 aatgctttttatatgttgttgtgtttgataaact 7814409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 37965895 - 37965850
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||    
T  37965895 cattccctcttagtgctgctccttgaacttgtagaacaatgttctt 37965850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 410
Target Start/End: Original strand, 38189737 - 38189826
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnn-gtagtcttcaacaaaccaagcacgaacaaccctcacaac 410  Q
    ||||||||||||||||||||||||||| ||||||||||             |||||||| | ||||||||||||||||||||||||||||    
T  38189737 tttcgatccattagaaccaactccatggaaaatggtagtttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaac 38189826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 54611113 - 54611016
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| |||||||||||||||||| ||||||||||            |||||||| | |||||||||||||| |||||||||||||  |||||||    
T  54611113 tttcgatcaattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgagcaaccctcacaaccaatgtcca 54611016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 10121924 - 10121971
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  10121924 gtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 10121971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 28417411 - 28417456
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    ||||||||||| | |||||||||||||||||| || ||||||||||    
T  28417411 cattccctcttagtgctgctccttgaacttgtggaacaatgttctt 28417456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 47333657 - 47333694
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaa 409  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  47333657 gtagtcttgaacaaaccaagcaagaacaaccctcacaa 47333694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1788 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold1788
Description:

Target: scaffold1788; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 449 - 511
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  449 cattccctcttggagttgctccttggacttgtagatcaatgttcttcgtatagacgcaccaat 511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1788; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 606 - 703
Alignment:
Q  322 tttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  606 tttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaaccctcacaaccaatgtcca 703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 197957 - 198004
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  197957 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcg 198004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 198083 - 198135
Alignment:
Q  307 tatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtag 359  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  198083 tatgaaaaaagtcaatttcgatccattagaaccaactccatagaaaatggtag 198135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 198153 - 198200
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  198153 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 198200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 12197 - 12135
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcaccaat 78  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||    
T  12197 cattccctcttggagttgattcttgaacttgtagatcaatgttcttcgtatagacgcaccaat 12135  T

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Target: scaffold0007; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 12058 - 11943
Alignment:
Q  304 caatatgaaagaagtgaatttcgatccattagaaccaactccatgaaaaatggtagnnnnnnnnnnnngtagtcttcaacaaaccaagcacgaacaaccc 403  Q
    |||||||||| | || | ||||||||||||||||||||||||||| ||||||||||            |||||||| | ||||||||||||||||||||     
T  12058 caatatgaaaaaggtaactttcgatccattagaaccaactccatggaaaatggtagttttttatttttgtagtcttgaccaaaccaagcacgaacaacct 11959  T
Q  404 tcacaactgatgtcca 419  Q
    |||||||  |||||||    
T  11958 tcacaaccaatgtcca 11943  T

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Target: scaffold0088 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 11896 - 11837
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttcttcgcatagacgcacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||    
T  11896 cattccctcttggagctgctccttgaacttgtagattaatgttctttgaataaacgcacc 11837  T

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Target: scaffold0088; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 11693 - 11646
Alignment:
Q  372 gtagtcttcaacaaaccaagcacgaacaaccctcacaactgatgtcca 419  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  11693 gtagtcttgaacaaaccaagcacgaacaaccctcacaaccaatgtcca 11646  T

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Target: scaffold1289 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 1271 - 1226
Alignment:
Q  16 cattccctcttggagctgctccttgaacttgtagatcaatgttctt 61  Q
    |||||| |||| | |||||||||||||||||||||||| |||||||    
T  1271 cattccttcttagtgctgctccttgaacttgtagatcagtgttctt 1226  T

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