View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8675_low_6 (Length: 398)

Name: NF8675_low_6
Description: NF8675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8675_low_6
NF8675_low_6
[»] chr8 (2 HSPs)
chr8 (14-398)||(12521341-12521725)
chr8 (300-358)||(33168316-33168373)
[»] chr4 (6 HSPs)
chr4 (47-231)||(53000067-53000251)
chr4 (74-234)||(12634151-12634310)
chr4 (165-234)||(15154647-15154716)
chr4 (14-237)||(8898762-8898981)
chr4 (167-248)||(10520192-10520273)
chr4 (170-232)||(7180437-7180499)
[»] chr1 (3 HSPs)
chr1 (49-248)||(45962911-45963108)
chr1 (56-232)||(28553635-28553810)
chr1 (313-358)||(15918098-15918142)
[»] chr7 (4 HSPs)
chr7 (47-230)||(10234916-10235099)
chr7 (156-232)||(9046446-9046522)
chr7 (132-192)||(19708169-19708229)
chr7 (165-232)||(1941430-1941497)
[»] chr2 (5 HSPs)
chr2 (49-248)||(24184978-24185175)
chr2 (167-232)||(31603035-31603100)
chr2 (171-237)||(16918027-16918093)
chr2 (47-88)||(31602924-31602965)
chr2 (311-351)||(31603483-31603523)
[»] chr3 (8 HSPs)
chr3 (155-269)||(20487879-20487996)
chr3 (130-248)||(31139153-31139271)
chr3 (49-248)||(8890739-8890935)
chr3 (49-248)||(12881607-12881804)
chr3 (47-248)||(4285096-4285301)
chr3 (49-90)||(4853696-4853737)
chr3 (49-90)||(4875430-4875471)
chr3 (158-231)||(11271663-11271736)
[»] chr5 (3 HSPs)
chr5 (53-245)||(26266687-26266877)
chr5 (160-229)||(16766324-16766393)
chr5 (298-358)||(12685705-12685764)
[»] chr6 (1 HSPs)
chr6 (170-232)||(31817596-31817658)
[»] scaffold1485 (1 HSPs)
scaffold1485 (49-90)||(1260-1301)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 12521725 - 12521341
Alignment:
Q  14 ttatactgatttcatttctaaggacggtgtatccatttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattc 113  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12521725 ttatactgatttcgtttctaaggacaatgtatccatttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattc 12521626  T
Q  114 taatggttgataattgttgagaccatttaagtacaacattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttg 213  Q
    | ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12521625 tcatgattgataattgttgagaccatttaatttcaacattgttgtcccaacactctcaaatctattctcatgttttgattgtcttatctaacctcatttg 12521526  T
Q  214 tttgaatatcaaacttcacatctcagttcttcgttatttgaaatatgattgaataataacaaggttatgttagaataggaactcaaataaaatagatttt 313  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  12521525 tttgaacatcaaacttcacatctcagtacttcgttatttgaaatatgattgaataataacaaggttatgttagaatagaaactcaaataaaatagattct 12521426  T
Q  314 agacttgagattgattaggattccatcattaaattattccaacaacactaggaaaagtccactcacacatgatcataatatacaa 398  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12521425 agacttgggattgattaggactccatcattaaattattccaacaacactaggaaaagtccactcacacatgatcataatatacaa 12521341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 33168316 - 33168373
Alignment:
Q  300 ataaaatagattttagacttgagattgattaggattccatcattaaattattccaacaa 358  Q
    |||||||||||||||||||| || ||||||| ||||| ||||||| |||||||||||||    
T  33168316 ataaaatagattttagactt-aggttgattatgattcaatcattagattattccaacaa 33168373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 53000067 - 53000251
Alignment:
Q  47 catttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagta 146  Q
    ||||||||||||||||||||||||   |||| ||||||||||||  ||| ||| ||  |   |||| | |||||| || ||  |||| ||| ||| |||     
T  53000067 catttggtatttcatgtttcctctctaaataaatgaatgtatctcaaaacaataattaaacatattatcatggtttatcatcattgataccctttgagtg 53000166  T
Q  147 caacattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttca 231  Q
    |||| || ||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||||| |  ||||||||||||||    
T  53000167 caaccttattgtcccaaaactctcaaaactattcacatgttttgattatcttgtctaacctcatttgatacaatatcaaacttca 53000251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 12634151 - 12634310
Alignment:
Q  74 aatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtacaa-cattgttgtcccaacactctcaa 172  Q
    |||||||||||||||||   |||||| ||| |  ||||||| ||||||||| ||| |||||||| ||||||| ||| | || ||||| ||| ||||  ||    
T  12634151 aatacatgaatgtatctc--aataataatcaaacctattctcatggttgattattattgagaccctttaagtgcaaaccttattgtctcaaaactcataa 12634248  T
Q  173 aactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacat 234  Q
    || || |||||||||||| || |||| ||||| ||||||||||  |||||||||||||||||    
T  12634249 aattactctcatgttttgtttatcttgtctaatctcatttgttctaatatcaaacttcacat 12634310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 15154716 - 15154647
Alignment:
Q  165 actctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacat 234  Q
    |||| ||||||||||||||||||||| || |||| ||||| |||||||| |  |||||||||||||||||    
T  15154716 actcacaaaactattctcatgttttgtttatcttgtctaatctcatttgctccaatatcaaacttcacat 15154647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 8898981 - 8898762
Alignment:
Q  14 ttatactgatttcatttctaaggacggtgtatccatttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattc 113  Q
    ||||| ||| |||||||||||||||  | ||| | ||||||||||||| ||||||||  ||||||||||||||||||   || ||| ||| |  ||||||    
T  8898981 ttataatgaattcatttctaaggacaatatattc-tttggtatttcatatttcctctcccaatacatgaatgtatct--caacaataatcaacactattc 8898885  T
Q  114 taatggttgataattgttgagaccatttaagtacaacattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttg 213  Q
    |  |||| ||| ||  |||||||| ||| ||| |||| || ||||||||| |||||  || ||||||| || ||||| || |||| ||||| |||||||     
T  8898884 tcttggtcgattatcattgagaccctttgagtgcaactttattgtcccaagactct-taatctattctaatattttgtttatcttgtctaatctcattta 8898786  T
Q  214 tttgaatatcaaacttcacatctc 237  Q
     |  ||||||||||||||| ||||    
T  8898785 atccaatatcaaacttcacctctc 8898762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 10520192 - 10520273
Alignment:
Q  167 tctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttcgtt 248  Q
    |||||||| |||||||||||||||||| |||| ||||| ||| | || |  |||||||| |||||||| ||||| |||||||    
T  10520192 tctcaaaattattctcatgttttgattatcttgtctaaactcgtatgatcaaatatcaatcttcacatttcagtacttcgtt 10520273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 7180499 - 7180437
Alignment:
Q  170 caaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcac 232  Q
    ||||||||||||||| |||||||| || | ||||| |||||||| |  |||||||||||||||    
T  7180499 caaaactattctcatattttgattatcctgtctaatctcatttgatctaatatcaaacttcac 7180437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 45963108 - 45962911
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtaca 148  Q
    |||||||||||||||||| ||| | |||||||||||||||||   || ||| ||| ||  ||| || |||||| || ||  |||||||  ||| ||| ||    
T  45963108 tttggtatttcatgtttcatctcaaaatacatgaatgtatctc--aacaataatcaagcttatcctcatggtttattatcattgagactctttgagtgca 45963011  T
Q  149 acattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttcgtt 248  Q
    || || |||||| || |||| ||||||||||||||||||||| || |||||||||| |||||||| |  ||||| ||||||||| ||  |||||||||||    
T  45963010 accttattgtccaaaaactcacaaaactattctcatgttttgtttatcttatctaatctcatttgatctaatattaaacttcacctcctagttcttcgtt 45962911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 28553810 - 28553635
Alignment:
Q  56 tttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtacaac-attg 154  Q
    |||||||||| || | | |||||||||||||||||   |||||  ||| |||||| |   ||||||||| ||| |||||||| ||| ||| |||  |||     
T  28553810 tttcatgttttctttcagaatacatgaatgtatctc--aataacaatcaagtctacttacatggttgattattattgagaccttttgagtgcaaatatta 28553713  T
Q  155 ttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcac 232  Q
    ||||| ||| |||  |||||||||| |||||||||| |  |||||||||| |||||||| || |||||||||||||||    
T  28553712 ttgtctcaagacttacaaaactattttcatgttttgttcatcttatctaatctcatttgattcaatatcaaacttcac 28553635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 15918142 - 15918098
Alignment:
Q  313 tagacttgagattgattaggattccatcattaaattattccaacaa 358  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||    
T  15918142 tagacttgag-ttgattaggattcaatcattagattattccaacaa 15918098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 10235099 - 10234916
Alignment:
Q  47 catttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagta 146  Q
    |||||||||||||||||||||||    |||||||||||||||||  |||||||  || ||  |||| |  |||||||| || ||||||| | ||| |||     
T  10235099 catttggtatttcatgtttcctcccgtaatacatgaatgtatctcaaaataatagtcaagcttattttcgtggttgattatcgttgagatcctttgagtg 10235000  T
Q  147 caacattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttc 230  Q
    |||| || ||||||||| || |||||||||||||||||| |||||||  ||| ||||| |||||||  |  |||||||||||||    
T  10234999 caaccttattgtcccaagacactcaaaactattctcatgctttgattaccttgtctaatctcattttatcaaatatcaaacttc 10234916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 9046522 - 9046446
Alignment:
Q  156 tgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcac 232  Q
    |||| ||| |||| ||||||||||||||||||||| ||||||| |||||  |||||| ||  |||||||||||||||    
T  9046522 tgtctcaagactcacaaaactattctcatgttttgtttgtcttgtctaatatcatttattctaatatcaaacttcac 9046446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 19708169 - 19708229
Alignment:
Q  132 gagaccatttaagtacaacattgttgtcccaacactctcaaaactattctcatgttttgat 192  Q
    |||||| ||| |||||||| || ||||||||| |||||||||  |||||||||||||||||    
T  19708169 gagaccctttgagtacaaccttattgtcccaagactctcaaagttattctcatgttttgat 19708229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 1941430 - 1941497
Alignment:
Q  165 actctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcac 232  Q
    |||| |||||||||||||| |||||| || |||| ||||| ||||||||||  || ||||||||||||    
T  1941430 actcacaaaactattctcacgttttgtttatcttgtctaatctcatttgttctaaaatcaaacttcac 1941497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 248
Target Start/End: Original strand, 24184978 - 24185175
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtaca 148  Q
    ||||||||||||| ||||| || | ||||||||||| |||||   || ||| ||| || ||||||| ||||||||| ||  |||||||| ||| ||| ||    
T  24184978 tttggtatttcatatttccactcagaatacatgaatatatctc--aacaataatcaagcctattctcatggttgattatcattgagaccctttgagtgca 24185075  T
Q  149 acattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttcgtt 248  Q
    || || ||||||||| ||||  |||||||||||| ||||||| || |||| ||||| |||||||| |  ||||||||| || || |||  ||||||||||    
T  24185076 accttattgtcccaagactcggaaaactattctcgtgttttgtttatcttgtctaatctcatttgatccaatatcaaatttgacctctttgttcttcgtt 24185175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 31603035 - 31603100
Alignment:
Q  167 tctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcac 232  Q
    |||||||||||||||| |||||||||| |||| ||||| |||||||| |  |||||||||||||||    
T  31603035 tctcaaaactattctcgtgttttgattatcttgtctaatctcatttgatccaatatcaaacttcac 31603100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 16918093 - 16918027
Alignment:
Q  171 aaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctc 237  Q
    |||||||||||||||||||| || |||| |||||  ||||||| |  ||||||||| ||||||||||    
T  16918093 aaaactattctcatgttttgtttatcttttctaatatcatttgatccaatatcaaaattcacatctc 16918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 31602924 - 31602965
Alignment:
Q  47 catttggtatttcatgtttcctctaacaatacatgaatgtat 88  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  31602924 catttggtatttcatgtttcatcttagaatacatgaatgtat 31602965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 31603483 - 31603523
Alignment:
Q  311 tttagacttgagattgattaggattccatcattaaattatt 351  Q
    |||||||||| | ||||||||||||||||||||| ||||||    
T  31603483 tttagacttgggtttgattaggattccatcattagattatt 31603523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 20487879 - 20487996
Alignment:
Q  155 ttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttcgt----tat 250  Q
    ||||||||| |||||||||| |||| |||||||||||||| ||| | |||||||||||| |  ||||||||||||||| |||| || ||| ||    |||    
T  20487879 ttgtcccaagactctcaaaa-tattttcatgttttgattgacttgtgtaacctcatttgatccaatatcaaacttcacctctcggtactttgtttgatat 20487977  T
Q  251 ttgaaatatgattgaataa 269  Q
    |||||||||||||||||||    
T  20487978 ttgaaatatgattgaataa 20487996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 31139153 - 31139271
Alignment:
Q  130 ttgagaccatttaagtacaacattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaactt 229  Q
    |||||||| ||||||| || | || || |||||| |||| ||||| | ||||||| ||||| || |||||||||| |||||||| |  ||||||||||||    
T  31139153 ttgagaccctttaagtgcagccttattatcccaagactcacaaaattgttctcatattttgtttatcttatctaatctcatttgatccaatatcaaactt 31139252  T
Q  230 cacatctcagttcttcgtt 248  Q
    ||| |||| ||||||||||    
T  31139253 cacctctcggttcttcgtt 31139271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 8890935 - 8890739
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtaca 148  Q
    ||||||| |||||||||||||| | ||| |||||||||||||   || ||| |   || ||||||| ||||||||| ||  ||||| || ||| ||| ||    
T  8890935 tttggtaattcatgtttcctctcataattcatgaatgtatctc--aacaataactaagcctattctcatggttgattatcattgagtccctttgagtgca 8890838  T
Q  149 acattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttcgtt 248  Q
    || || |||||| || ||||  | ||||||| |||||||||| || |||| ||||| || |||||||  ||||||||||||||| |||| ||||||||||    
T  8890837 accttattgtccaaaaactcatacaactattatcatgttttg-ttatcttgtctaatctaatttgttccaatatcaaacttcacttctcggttcttcgtt 8890739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 12881804 - 12881607
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtaca 148  Q
    |||||||||||||||||||||| | |||||||||||||||||   |||||| | | ||  ||||||  ||||| || ||  || ||||| ||| ||| ||    
T  12881804 tttggtatttcatgtttcctctcaaaatacatgaatgtatct--caataataaccaagcttattcttttggttaattatcattaagaccctttgagtgca 12881707  T
Q  149 acattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttcgtt 248  Q
    |  || |||||| || |||| || |||||||||||||||||| || ||||  |||| || | ||| |  ||||||||||||||| |||| ||||||||||    
T  12881706 atcttattgtcctaagactcacataactattctcatgttttgtttatcttgcctaaactaagttgatccaatatcaaacttcacctctcggttcttcgtt 12881607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 4285301 - 4285096
Alignment:
Q  47 catttggtatttcatgtttcctctaacaatacatgaatgtatctggaaataatg----atcgagtctattctaatggttgataattgttgagaccattta 142  Q
    |||||| |||||||||||||||||   |||||||||||||||||  ||| |||     | | | |||||||| ||||||||| ||  |||||| | ||||    
T  4285301 catttgatatttcatgtttcctctcgaaatacatgaatgtatctcaaaacaatatataagcaaatctattctcatggttgattatcattgagatctttta 4285202  T
Q  143 agtacaacattgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttc 242  Q
     ||  ||| || |||| |||| ||||| |||| |||||| ||||||||| |  ||||| ||| |||||||| |   ||||||||||| ||||||| || |    
T  4285201 ggtgtaaccttattgttccaagactctaaaaattattctgatgttttgaataccttatttaatctcatttgatcctatatcaaactttacatctcggtac 4285102  T
Q  243 ttcgtt 248  Q
    ||||||    
T  4285101 ttcgtt 4285096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 4853737 - 4853696
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatct 90  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  4853737 tttggtatttcatgtttcctataagattacatgaatgtatct 4853696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 4875471 - 4875430
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatct 90  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  4875471 tttggtatttcatgtttcctataagattacatgaatgtatct 4875430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 11271736 - 11271663
Alignment:
Q  158 tcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttca 231  Q
    |||||| |||| ||||| ||||||||| ||||| || |||| ||||| |||||||| |  ||||||||||||||    
T  11271736 tcccaagactcacaaaattattctcatattttgtttatcttgtctaatctcatttgatccaatatcaaacttca 11271663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 245
Target Start/End: Complemental strand, 26266877 - 26266687
Alignment:
Q  53 gtatttcatgtttcctctaacaatacatgaatgtatctggaaataatgatcgagtctattctaatggttgataattgttgagaccatttaagtacaacat 152  Q
    |||||| ||||||||| | | ||||||| |||||||||   |||||| ||| ||| |||||| ||||||||| ||  |||||||| ||||||| || | |    
T  26266877 gtattttatgtttcctttgagaatacataaatgtatctc--aataataatcaagtttattctcatggttgattatcattgagaccctttaagtgcatctt 26266780  T
Q  153 tgttgtcccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcacatctcagttcttc 245  Q
    | || || ||| |||| |||||||||||| |||||||| || | || ||| | |||||||| |  |||||||||| |||||| ||||| ||||    
T  26266779 tattatctcaagactcacaaaactattcttatgttttgtttatattgtcttatctcatttgatccaatatcaaacctcacatttcagtccttc 26266687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 16766324 - 16766393
Alignment:
Q  160 ccaacactctcaaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaactt 229  Q
    |||| |||||||||| ||||||||| |||||||| |||| ||||||||||||||||  ||| ||||||||    
T  16766324 ccaagactctcaaaattattctcatattttgattatcttgtctaacctcatttgttcaaatttcaaactt 16766393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 12685705 - 12685764
Alignment:
Q  298 aaataaaatagattttagacttgagattgattaggattccatcattaaattattccaacaa 358  Q
    ||||||||||||||||||||||| | |||| || ||||| ||||||| |||| ||||||||    
T  12685705 aaataaaatagattttagacttg-ggttgaatatgattcaatcattagattagtccaacaa 12685764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 31817596 - 31817658
Alignment:
Q  170 caaaactattctcatgttttgattgtcttatctaacctcatttgtttgaatatcaaacttcac 232  Q
    ||||||||||||||||||||| || |||| ||||| ||||||||||  |||||||||||||||    
T  31817596 caaaactattctcatgttttgcttatcttctctaatctcatttgttctaatatcaaacttcac 31817658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1485 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1485
Description:

Target: scaffold1485; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 1260 - 1301
Alignment:
Q  49 tttggtatttcatgtttcctctaacaatacatgaatgtatct 90  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  1260 tttggtatttcatgtttcctataagattacatgaatgtatct 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University