View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8676_high_1 (Length: 505)

Name: NF8676_high_1
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8676_high_1
NF8676_high_1
[»] chr4 (4 HSPs)
chr4 (1-493)||(2873951-2874442)
chr4 (1-348)||(2900528-2900875)
chr4 (1-348)||(2884089-2884436)
chr4 (180-226)||(51046642-51046688)
[»] chr2 (3 HSPs)
chr2 (1-358)||(44213225-44213582)
chr2 (1-348)||(44225386-44225733)
chr2 (1-348)||(44236200-44236546)
[»] chr7 (12 HSPs)
chr7 (3-263)||(39567444-39567704)
chr7 (3-256)||(39550651-39550904)
chr7 (3-263)||(39360711-39360971)
chr7 (174-256)||(39334909-39334991)
chr7 (174-256)||(39346167-39346249)
chr7 (3-256)||(39541393-39541646)
chr7 (16-229)||(39577264-39577477)
chr7 (30-118)||(42175850-42175938)
chr7 (30-115)||(42135598-42135683)
chr7 (180-252)||(42135748-42135820)
chr7 (36-118)||(42156684-42156766)
chr7 (30-118)||(42144731-42144819)
[»] chr8 (2 HSPs)
chr8 (172-232)||(4497929-4497989)
chr8 (11-94)||(4498067-4498150)
[»] chr1 (1 HSPs)
chr1 (12-153)||(2151464-2151605)


Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 2874442 - 2873951
Alignment:
Q  1 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874442 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 2874343  T
Q  101 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874342 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 2874243  T
Q  201 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874242 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 2874143  T
Q  301 ggtgcatttcatctcctaccatggtatcagcacatatatccaaccccagtatctgcaatagaaaaattagaggtgaaaaatgaagtcttagaaacgtcaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2874142 ggtgcatttcatctcctaccatggtatcagcacatatatccaaccccaatatctgcaatagaaaaattagaggtgaaaaatgaagtgttagaaacgtcaa 2874043  T
Q  401 aattgaagactaatctaattttttcgatctttctctaatttttcgagagtaatttaacttttctagtataagagaactttataatagtattat 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2874042 aattgaagactaatctaattttttcgatctttctctaatttttcgagagtaatttaacttttctagtataagagaacttta-aatagtattat 2873951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2900528 - 2900875
Alignment:
Q  1 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 100  Q
    |||||||||  ||||||||||| |||||||||| |||||| |||||||| || ||||||| |||||| |||| |||||||||||||||||||||||||||    
T  2900528 tgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcata 2900627  T
Q  101 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 200  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||     
T  2900628 agtctctggtgctggttgaagcaaagagataactgcagttccattaagaatatgaacatattgcctaagagatttcacaatttggaaagttgtggaactg 2900727  T
Q  201 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 300  Q
    || |||||||| ||||||||||||||||||| | | || | ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  2900728 tccaagccagtagatatttcatccatgaataaagcatttgctggtccaaccaacatttctcctgtggtaactcgctttctttgtcctccggagataccac 2900827  T
Q  301 ggtgcatttcatctcctaccatggtatcagcacatatatccaacccca 348  Q
    |   ||||||||  || ||||| ||||||||||||| |||||||||||    
T  2900828 gtaacatttcattccccaccatagtatcagcacatacatccaacccca 2900875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 2884436 - 2884089
Alignment:
Q  1 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 100  Q
    |||||||||  ||||||||||||||||||| || ||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  2884436 tgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcata 2884337  T
Q  101 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 200  Q
    |||||| |||||||| || || || ||||||| ||  ||||||| |||||| | ||||||||||  ||||||| |||||||||| |||| |||||||||     
T  2884336 agtctcaggtgctggttggagtaaagagataactgtggttccattaagaatgtgaacatattgctgaagagatctcacaatttggaaagttgtggaactg 2884237  T
Q  201 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 300  Q
    || || ||||| |||||||||||||||||||   | || | ||| || |||||||| ||||||||||||| || ||||||||| || ||||| |||||||    
T  2884236 tccaaaccagtagatatttcatccatgaataatgcatttgctggcccgaccaacatctctcctgtggtaactcgctttctttgacctccggaaataccac 2884137  T
Q  301 ggtgcatttcatctcctaccatggtatcagcacatatatccaacccca 348  Q
    |   ||||||||  || ||||| || |||||||||| |||||| ||||    
T  2884136 gcaacatttcattccccaccatagtgtcagcacatacatccaatccca 2884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 51046688 - 51046642
Alignment:
Q  180 atttgaaaagctgtggaactatctaagccagttgatatttcatccat 226  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||    
T  51046688 atttgaaaagtagtggaactgtctaagccagttgatatttcatccat 51046642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 44213225 - 44213582
Alignment:
Q  1 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 100  Q
    ||||||| |||||||| ||||| |||||||||| ||| || || || ||||| |||| ||  ||||||||||  |  ||||||||||||||||| |||||    
T  44213225 tgaaacccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagatattaagataatgtcatcaaaaagatcata 44213324  T
Q  101 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 200  Q
    |||||| ||||||||||| |||| ||| |||| |||||| ||||  | ||| | |||||||||||| |||||  ||||||||||||||| |||||||||     
T  44213325 agtctcaggtgctggctggagcagtgatataactgcagtgccattcataatgtgaacatattgcctcagagagctcacaatttgaaaagttgtggaactg 44213424  T
Q  201 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 300  Q
    || |  ||||| || |||||||||||||| |   | || | ||||||||||||||| |||||||||||||  | ||| |||||||| |||||||||||||    
T  44213425 tccagtccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtggtaacacgcttcctttgtcctccggagataccac 44213524  T
Q  301 ggtgcatttcatctcctaccatggtatcagcacatatatccaaccccagtatctgcaa 358  Q
    |   ||||||||| |||||||||||||| |||||||||||||||||||  ||||||||    
T  44213525 gcaacatttcatcccctaccatggtatccgcacatatatccaaccccaaaatctgcaa 44213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 44225386 - 44225733
Alignment:
Q  1 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 100  Q
    ||||||| || | ||||||||| |||||||||| ||| || || || ||||| |||| ||  |||||||| |  |  ||||||||||||||||| |||||    
T  44225386 tgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagaaattaagataatgtcatcaaaaagatcata 44225485  T
Q  101 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 200  Q
    |||||| |||||||| || |||| ||| |||| |||||| ||||  | ||| | ||||||||| || |||||  ||||||| |||||||  ||||||||     
T  44225486 agtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagtagtggaactg 44225585  T
Q  201 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 300  Q
    || |  ||||| || |||||||||||||| |   | || | ||||||||||||||| |||||||| || |  | ||| || ||||| || ||||||||||    
T  44225586 tccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagataccac 44225685  T
Q  301 ggtgcatttcatctcctaccatggtatcagcacatatatccaacccca 348  Q
    |   |||||||||||| ||||||||||| || ||||||||||||||||    
T  44225686 gtaacatttcatctcccaccatggtatccgcgcatatatccaacccca 44225733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 44236200 - 44236546
Alignment:
Q  1 tgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcata 100  Q
    ||||||| || | ||||||||| |||||||||| ||| || || || ||||| |||| ||  |||||||| |  |  ||||||||||||||||| |||||    
T  44236200 tgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataatgtcatcaaaaagatcata 44236299  T
Q  101 agtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaacta 200  Q
    |||||| |||||||| || |||| ||| |||| |||||| ||||  | ||| | ||||||||| || |||||  ||||||| ||||||| |||||||||     
T  44236300 agtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagttgtggaactg 44236399  T
Q  201 tctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccac 300  Q
    || |  ||||| || | |||||||||||| |   | || | ||||||||||||||| |||||||| || |  | ||| || ||||| || ||||||||||    
T  44236400 tccagcccagtaga-aattcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagataccac 44236498  T
Q  301 ggtgcatttcatctcctaccatggtatcagcacatatatccaacccca 348  Q
    |   |||||||||||| ||||||||||| || ||||||||||||||||    
T  44236499 gtaacatttcatctcccaccatggtatccgcgcatatatccaacccca 44236546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 39567444 - 39567704
Alignment:
Q  3 aaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataag 102  Q
    ||||| || ||||||||||||||||| || | ||| || || |||||||| | |||   || |||||| |  ||||||| ||| |||||||| |  ||||    
T  39567444 aaaccgattgattcaaaaaattcaagtacgtgttcccggggaccttggtatataatgcgactatcagagagtagaataacgtcgtcaaaaagattgtaag 39567543  T
Q  103 tctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatc 202  Q
    ||||||||| |||||| || | ||||||||  || |||||||  ||||| |  |||| |||||| |  || |||||||||||||||| ||| || |||||    
T  39567544 tctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctcattgaattcacaatttgaaaagttgttgagctatc 39567643  T
Q  203 taagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcct 263  Q
     || ||||| |||||||| |||||||||||| |||| |  |||||||||||||||||||||    
T  39567644 caaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaacatttctcct 39567704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 39550651 - 39550904
Alignment:
Q  3 aaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataag 102  Q
    |||||||| ||||| ||||||||||| || |  ||||| || |||||||| | ||| | || |||||| |  ||||||||||| |||||||| |  ||||    
T  39550651 aaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataatgtcgtcaaaaagattgtaag 39550750  T
Q  103 tctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatc 202  Q
    ||||||||| ||||||||| |  ||||| |  |||||||| |  ||||| |  ||| ||||| | |  || |||||||| ||||||| ||| || |||||    
T  39550751 tctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatgtggacaaattgcttcattgaattcacaatctgaaaagttgtcgagctatc 39550850  T
Q  203 taagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 256  Q
     || ||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
T  39550851 caaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaacat 39550904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 39360971 - 39360711
Alignment:
Q  3 aaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataag 102  Q
    |||||||| ||||| ||||||||||| || | ||| || || |||||||||| ||| | || |||||| |  || |||||||| |||||||| |  ||||    
T  39360971 aaaccaattgattcgaaaaattcaagcacgtgttcccggggaccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaagattgtaag 39360872  T
Q  103 tctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatc 202  Q
    |||||||||  ||||| || | |||||| |   | ||||| |  ||||| | |||||||||||| |  || |||||||||||||||| ||| || |||||    
T  39360871 tctctggtggaggctgcaggagtgagatcaccacggttcctttgagaatgtgaacatattgcctcattgaattcacaatttgaaaagttgttgagctatc 39360772  T
Q  203 taagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcct 263  Q
     || ||||| ||||||||||||||||||| | |||| |  |||||||||||||| ||||||    
T  39360771 caaaccagtagatatttcatccatgaataaagctttagtcggtccaaccaacatctctcct 39360711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 39334991 - 39334909
Alignment:
Q  174 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 256  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| | |||||||||||||||    
T  39334991 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacat 39334909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 39346249 - 39346167
Alignment:
Q  174 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 256  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| | |||||||||||||||    
T  39346249 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacat 39346167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 39541393 - 39541646
Alignment:
Q  3 aaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataag 102  Q
    ||||| || ||||| ||||||||||| || |  ||||| || |||||||| | ||| | || |||||| |  |||||||| ||||||||||| |   | |    
T  39541393 aaaccgattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataatttcatcaaaaagattgaatg 39541492  T
Q  103 tctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatc 202  Q
    ||||||||| ||||||||| | |||||| |  || ||||| |  ||||| |  ||||| ||| | |  || |||||||||||||||| ||| || |||||    
T  39541493 tctctggtggtggctgaaggagtgagatgacagccgttcctttgagaatgtgtacatactgctttattgaattcacaatttgaaaagttgttgagctatc 39541592  T
Q  203 taagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 256  Q
     || ||||| ||||||||||||||||||||| |||| |  |||||||| |||||    
T  39541593 caaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacat 39541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 39577264 - 39577477
Alignment:
Q  16 caaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctgg 115  Q
    ||||||||||||| || | ||||| ||| || ||||| ||||| |  || ||||| |  ||||||||||| |||||||| |||||||||||||||| |||    
T  39577264 caaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaataatgtcgtcaaaaagatcataagtctctggtggtgg 39577363  T
Q  116 ctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgat 215  Q
    ||| |  | |||||| |  ||||||||||  || |  |  ||||| ||| | |  |||||||||| |||||||| ||| || ||||| || ||||| |||    
T  39577364 ctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagat 39577463  T
Q  216 atttcatccatgaa 229  Q
    ||||||||||||||    
T  39577464 atttcatccatgaa 39577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 42175850 - 42175938
Alignment:
Q  30 acattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg 118  Q
    ||||||||||| || ||||| || ||||||| ||| || || |  ||||||||||| |||||||||||| | |||||||||||||||||    
T  42175850 acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg 42175938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 42135598 - 42135683
Alignment:
Q  30 acattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctgg 115  Q
    |||||||| || ||||||||||| ||||||| ||| || || |  || |||||||||||||| |||||| | ||||||||||||||    
T  42135598 acattttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctgg 42135683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 42135748 - 42135820
Alignment:
Q  180 atttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaacca 252  Q
    ||||||||||  || ||||||||||| || |||||||||||||||||||| || ||||| | |||||| ||||    
T  42135748 atttgaaaagtggttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcctacca 42135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 42156684 - 42156766
Alignment:
Q  36 tcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg 118  Q
    ||||| |||||||| || ||||||| ||| || || |  ||||||||||| ||||| |||||| | |||||||||||||||||    
T  42156684 tcacgtggtccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctg 42156766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 42144731 - 42144819
Alignment:
Q  30 acattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg 118  Q
    ||||||||||| || ||||| || || |||| ||| || || | |||||||||||| ||||| || ||| | |||||||||||||||||    
T  42144731 acattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatgtcgtcaaagaggtcaaatgtctctggtgctggctg 42144819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 4497989 - 4497929
Alignment:
Q  172 atttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatag 232  Q
    |||||||||||||||| | ||| |||||||| |  ||||||||||||||||||||||||||    
T  4497989 atttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaatag 4497929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 4498150 - 4498067
Alignment:
Q  11 agattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaag 94  Q
    ||||||||| ||||||| ||  | |||||| || |||||||| |||| || ||| ||||||| |||||||||||||||||||||    
T  4498150 agattcaaagaattcaacaatgtgttcacgtggaccttggtacacaacttgaccctcagatataagaataatgtcatcaaaaag 4498067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 2151464 - 2151605
Alignment:
Q  12 gattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtg 111  Q
    ||||||||||| || || |||| ||| |  |||||||| || |||||||  |||||||  | ||| || || |||||||| ||||||||||| |||||||    
T  2151464 gattcaaaaaactctagtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtg 2151563  T
Q  112 ctggctgaagcaatgagataagtgcagttccatgaagaatat 153  Q
    |||| || || |  || | ||||||||||||||  |||||||    
T  2151564 ctggttgtagaagagaaacaagtgcagttccatttagaatat 2151605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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