View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8676_high_2 (Length: 395)
Name: NF8676_high_2
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8676_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 42198679 - 42199049
Alignment:
| Q |
15 |
attaagtagtctagatactaaaaattcaccataaaggtaaataagtgaagaacctgaaattcgaactctgatccttgatttcttgcatacataatacaat |
114 |
Q |
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| T |
42198679 |
attaagtagtctagatactaaaaattcaccataaaggtaaataagtgaggaatctgaaattcgaactctgatccttaactccctgcatacataatacaat |
42198778 |
T |
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| Q |
115 |
gtctctatcagctgatttatgctcacgcgacaaaatcatgtaattattactttgacgatatttgagattttaattgaattaggcttttgtacaccgatgg |
214 |
Q |
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| T |
42198779 |
gtccctatcagctgatttatgctcacgcgacaaaatcatgtaattattactttgacaatatttgagattttaattgaattaggcttttgtacaccgatgg |
42198878 |
T |
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| Q |
215 |
taactattatgggctttgtgctctcacaagtgttatatcacaaatggggggcaaatttgttgtgaggccttgtttttcattaattatagttttgaaaaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
42198879 |
taactattatgggctttgtgctctcacaagtgttatatcacaaatggggggcaaatttgttgtgaggccttgtttttccttaattctagttttgaaaaaa |
42198978 |
T |
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| Q |
315 |
ggtttgttgcaaaggatttgagatccatttggagagatagcaacaaagaatttaaaaaataaataatgatgt |
386 |
Q |
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|| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198979 |
gg-ttgttgctaaggatttgagatccatttcgagagatagcaacaaagaatttaaaaaataaataatgatgt |
42199049 |
T |
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