View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8676_high_4 (Length: 366)
Name: NF8676_high_4
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8676_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 47385869 - 47385535
Alignment:
| Q |
13 |
cagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggg |
112 |
Q |
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| T |
47385869 |
cagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggg |
47385770 |
T |
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| Q |
113 |
gtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaagg |
212 |
Q |
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| T |
47385769 |
gtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaagg |
47385670 |
T |
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| Q |
213 |
ttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactctcattaccaagattctccgtacataattca |
312 |
Q |
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| T |
47385669 |
ttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccgtacataattca |
47385570 |
T |
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| Q |
313 |
aggctctttggactcatagccaaagatgaacgttt |
347 |
Q |
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| T |
47385569 |
aggctctttggactcatagccaaagaggaacgttt |
47385535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 47373064 - 47373390
Alignment:
| Q |
14 |
agagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtgggg |
113 |
Q |
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| T |
47373064 |
agagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggt |
47373163 |
T |
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| Q |
114 |
tctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggt |
213 |
Q |
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| T |
47373164 |
tctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggt |
47373263 |
T |
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| Q |
214 |
tctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactctcattaccaagattctccgtacataattcaa |
313 |
Q |
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| T |
47373264 |
tgtctttg---ctccattgttcccattgaagacaacaataagtcgttttctacaatgtcagtaccactctcgttgccaagattttctgtgcacaattcaa |
47373360 |
T |
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| Q |
314 |
ggctctttggactcatagccaaagatgaac |
343 |
Q |
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| T |
47373361 |
gactctttggactcagaaccaaagaggaac |
47373390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
36 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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