View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8676_high_5 (Length: 347)
Name: NF8676_high_5
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8676_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 15307264 - 15307040
Alignment:
| Q |
1 |
tatgaacctaaatagcaaaaattgaatttgaacttcgaatttaagtgaatcatgtttggatgtttattcaaaaacgtaagtctgatgtaaaggttaatgt |
100 |
Q |
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| T |
15307264 |
tatgaacctaaatagcaaaaattgaatttgaacttcgaatttaagtgaatcatgtttggatgtttattcgaaaacgcaagtctgatgtaaaggttaatgt |
15307165 |
T |
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| Q |
101 |
aaaattttcattccaatgtaaaagctcttttttatcatttctactaaaatcacggtttgaatgcgcgattaattttgccaagccgtgaccaaatatttga |
200 |
Q |
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| T |
15307164 |
aaaattttcaacccaatgtaaaagctattttttatcatttctactaaaatcacggtttgaatgtgcgattaattttgccaagccgtgaccaaatatttga |
15307065 |
T |
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| Q |
201 |
ttgttggctaaaaccacacttgaca |
225 |
Q |
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|||||||||||| |||||||||||| |
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| T |
15307064 |
ttgttggctaaatccacacttgaca |
15307040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 15307015 - 15306907
Alignment:
| Q |
217 |
cacttgacatgtgagagtaaaattattggaacaaaacacaatgtgacaagaacggacctcactacatggcaccaaaggccactgaatccaacaataattt |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15307015 |
cacttgacatgtgagagtaaaattattgtaacaaaacacaatgtgacaagaacggacctcactacatggcaccaaaggccactgaatccaacaataattt |
15306916 |
T |
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| Q |
317 |
ggaggctag |
325 |
Q |
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||||||||| |
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| T |
15306915 |
ggaggctag |
15306907 |
T |
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