View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8676_low_10 (Length: 245)

Name: NF8676_low_10
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8676_low_10
NF8676_low_10
[»] chr3 (8 HSPs)
chr3 (122-239)||(13759935-13760048)
chr3 (1-85)||(13760094-13760178)
chr3 (4-73)||(8859711-8859780)
chr3 (1-67)||(11133578-11133644)
chr3 (4-73)||(11152143-11152212)
chr3 (37-82)||(49499517-49499562)
chr3 (38-76)||(45004297-45004335)
chr3 (37-82)||(36144833-36144878)
[»] chr2 (6 HSPs)
chr2 (1-73)||(18684523-18684595)
chr2 (19-73)||(38718927-38718981)
chr2 (28-73)||(10880108-10880153)
chr2 (39-81)||(33650986-33651028)
chr2 (40-73)||(11818440-11818473)
chr2 (28-76)||(41545006-41545054)
[»] chr6 (4 HSPs)
chr6 (12-83)||(20614773-20614844)
chr6 (1-73)||(15299942-15300014)
chr6 (6-73)||(30449426-30449493)
chr6 (37-73)||(23508847-23508883)
[»] chr1 (8 HSPs)
chr1 (1-73)||(45638131-45638203)
chr1 (37-82)||(3603509-3603554)
chr1 (37-82)||(49702532-49702577)
chr1 (37-73)||(24065320-24065356)
chr1 (17-82)||(2002525-2002590)
chr1 (40-81)||(13288225-13288266)
chr1 (28-73)||(19315162-19315207)
chr1 (37-82)||(26333607-26333652)
[»] chr7 (9 HSPs)
chr7 (1-83)||(36475995-36476076)
chr7 (25-72)||(23068999-23069046)
chr7 (1-73)||(19378714-19378786)
chr7 (37-82)||(26016635-26016680)
chr7 (37-73)||(48100737-48100773)
chr7 (28-73)||(2214576-2214621)
chr7 (37-82)||(33611021-33611066)
chr7 (37-73)||(3896572-3896608)
chr7 (37-73)||(32480322-32480358)
[»] chr5 (7 HSPs)
chr5 (1-63)||(22785939-22786001)
chr5 (1-83)||(1416739-1416821)
chr5 (28-76)||(29644777-29644825)
chr5 (1-60)||(8274754-8274813)
chr5 (28-73)||(13698983-13699028)
chr5 (28-73)||(17758999-17759044)
chr5 (37-73)||(23622610-23622646)
[»] chr8 (6 HSPs)
chr8 (28-73)||(41344319-41344364)
chr8 (37-73)||(2246718-2246754)
chr8 (36-73)||(9530635-9530672)
chr8 (28-76)||(11840284-11840332)
chr8 (5-73)||(26131927-26131995)
chr8 (37-73)||(37590034-37590070)
[»] chr4 (3 HSPs)
chr4 (1-60)||(12698909-12698968)
chr4 (35-76)||(33480497-33480538)
chr4 (37-73)||(13686115-13686151)
[»] scaffold0040 (1 HSPs)
scaffold0040 (37-73)||(62485-62521)
[»] scaffold0031 (1 HSPs)
scaffold0031 (37-73)||(44584-44620)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 13760048 - 13759935
Alignment:
Q  122 ttgtgatccattaatatt-agtatagacgtctaaaattaccatacttaataacaagacaatcaataatttcccaaaaagagaaatcaatcaataaaatca 220  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  13760048 ttgtgatccattaatatttagtatagacgtctaaaattaccatacttaataacaa-----tcaataatttcccaaaaagagaaatcaatcaataaaatca 13759954  T
Q  221 tgcaatcagtaacaccaaa 239  Q
    |||||||| ||||||||||    
T  13759953 tgcaatcattaacaccaaa 13759935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13760178 - 13760094
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataaacacattttact 85  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13760178 attagctagtcccaccacttattctattgtaccttgttgtattgaacatcttattattaatgaaatgctataaacacattttact 13760094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 8859711 - 8859780
Alignment:
Q  4 agctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||| | |||||||  ||||||||||| |||||||||||| |||||||||||||||||||||    
T  8859711 agctagtcccactatttattcttatgtacctcgttatattgaacatctgattattaatgaaatgctataa 8859780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11133644 - 11133578
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatg 67  Q
    ||||||||||||||| |||||||||  ||||||||||||||| |||||| | |||||||||||||||    
T  11133644 attagctagtcccactacttattcttatgtacctcgttgtatagaacatatgattattaatgaaatg 11133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 11152212 - 11152143
Alignment:
Q  4 agctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||| | |||||||  ||||||| ||| |||||||||||| |||||||||||||||||||||    
T  11152212 agctagtcccactatttattcttatgtaccttgttatattgaacatctgattattaatgaaatgctataa 11152143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 49499517 - 49499562
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||    
T  49499517 ttgtattgaatctcttattattaatgaaatgctataaacatatttt 49499562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 45004297 - 45004335
Alignment:
Q  38 tgtattgaacatcttattattaatgaaatgctataaaca 76  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  45004297 tgtattgaacctattattattaatgaaatgctataaaca 45004335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 36144833 - 36144878
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||||||| |||| |||||||||||||||||||| || |||||    
T  36144833 ttgtattgaacctcttgttattaatgaaatgctataagcatatttt 36144878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18684595 - 18684523
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||||||    
T  18684595 attagttagtcccaccacttattcttatgtacctcgttgtattgaatatctgattattaatgaaatgctataa 18684523  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 38718981 - 38718927
Alignment:
Q  19 ttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  38718981 ttattctattgtacctcgttgtattgaataagttattattaatgaaatgttataa 38718927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 10880108 - 10880153
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  10880108 tgtacctcgttgtattgaacaagttattattaatgaaatgctataa 10880153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 33650986 - 33651028
Alignment:
Q  39 gtattgaacatcttattattaatgaaatgctataaacacattt 81  Q
    |||||||| |||||||||||||||||||||| |||||| ||||    
T  33650986 gtattgaatatcttattattaatgaaatgctctaaacatattt 33651028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 11818473 - 11818440
Alignment:
Q  40 tattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||| |||||||||||||||||||||||||    
T  11818473 tattgaacctcttattattaatgaaatgctataa 11818440  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 41545006 - 41545054
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataaaca 76  Q
    |||||||| |||||||||||| |||||||||||| | ||| ||||||||    
T  41545006 tgtacctcattgtattgaacaacttattattaataagatgatataaaca 41545054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 20614773 - 20614844
Alignment:
Q  12 ccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataaacacatttta 83  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||| ||| |||||    
T  20614773 ccaccacttattctattatacctcattgtattgaacatctgattattaattaaatgctataagcacgtttta 20614844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15300014 - 15299942
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||| ||| |||||| | ||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||    
T  15300014 attatctaatcccactatttattctattgtatctcgttgtattgaacatttaattattaatgaaatgttataa 15299942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 30449493 - 30449426
Alignment:
Q  6 ctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||| |||| |||||||| |||||||||| ||||||| ||| ||||||||||||    
T  30449493 ctagtcccactgcttattatattatacctcgtcgtattgaacaacttattagtaaggaaatgctataa 30449426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 23508883 - 23508847
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  23508883 ttgtattgaacctcttattattaatgaaatgcaataa 23508847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45638131 - 45638203
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||||||  |||||||||  |||||||||||||||||||||||| ||| ||||||||||| |||||    
T  45638131 attagctagtcccattacttattcttatgtacctcgttgtattgaacatctgatttttaatgaaatgttataa 45638203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 3603554 - 3603509
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||    
T  3603554 ttgtattgaacctcttattattaatgaaatgttataaacatatttt 3603509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 49702532 - 49702577
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||||    
T  49702532 ttgtattgaacctcttattattaatgagatgctataaacatatttt 49702577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 24065320 - 24065356
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24065320 ttgtattgaacttcttattattaatgaaatgctataa 24065356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 2002590 - 2002525
Alignment:
Q  17 acttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||| |||| ||||| |||||||||||  | | ||||||||||| ||||||||||||| ||||    
T  2002590 acttattttattatacctagttgtattgaaactttgattattaatgagatgctataaacacttttt 2002525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 13288225 - 13288266
Alignment:
Q  40 tattgaacatcttattattaatgaaatgctataaacacattt 81  Q
    |||||||  |||||||||||||||||||||||||||| ||||    
T  13288225 tattgaatctcttattattaatgaaatgctataaacatattt 13288266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 19315162 - 19315207
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||||||| ||||| |||||| |||| |||||||||||    
T  19315162 tgtacctcgttgtattaaacattttattaataataaaatgctataa 19315207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 26333652 - 26333607
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||||||  | |||| |||||||||||||||||||||||||||    
T  26333652 ttgtattgaaattattatcattaatgaaatgctataaacacatttt 26333607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36475995 - 36476076
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataaacacatttta 83  Q
    |||||||||| |||||||||||| |||| ||||| |||||||||||||||| ||||||||| ||||| ||||| ||| |||||    
T  36475995 attagctagttccaccacttatt-tattataccttgttgtattgaacatctgattattaataaaatgatataagcacgtttta 36476076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 23068999 - 23069046
Alignment:
Q  25 tattgtacctcgttgtattgaacatcttattattaatgaaatgctata 72  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23068999 tattgtacctcgttgtattgaacatctgattattaatgaaatgatata 23069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19378786 - 19378714
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||| ||||||||| ||| |||  | |||||||| |||||||||||| |||||||||||| |||||||||||    
T  19378786 attagttagtcccactactcattacaatgtacctcattgtattgaacaacttattattaataaaatgctataa 19378714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 26016635 - 26016680
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    |||||||||| |||||||||||||||||||||||||| || |||||    
T  26016635 ttgtattgaatatcttattattaatgaaatgctataagcatatttt 26016680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 48100773 - 48100737
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||| ||||||||||||||||||||||||||    
T  48100773 ttgtattgaatatcttattattaatgaaatgctataa 48100737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 2214621 - 2214576
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||| |||||||||||| | ||||||||||| ||||||||||    
T  2214621 tgtacctcattgtattgaacaacctattattaatgtaatgctataa 2214576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 33611066 - 33611021
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataaacacatttt 82  Q
    ||||||||||| ||||||||||||| ||||||||||| || |||||    
T  33611066 ttgtattgaacctcttattattaataaaatgctataagcatatttt 33611021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 3896572 - 3896608
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||||||||||||||||||||||    
T  3896572 ttgtattgaaactcttattattaatgaaatgctataa 3896608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 32480322 - 32480358
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||||||||||||||||||||||    
T  32480322 ttgtattgaaactcttattattaatgaaatgctataa 32480358  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22785939 - 22786001
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatga 63  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||||||| |||||||||||    
T  22785939 attagctagttccaccacttattcttacgtacctcgttgtattgaacatctgattattaatga 22786001  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1416739 - 1416821
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataaacacatttta 83  Q
    ||||||||||||||  ||||||| ||||||||||| ||||||||||||| | ||| ||||| ||||  ||||||||| |||||    
T  1416739 attagctagtcccattacttattttattgtacctcattgtattgaacatttgatttttaataaaatattataaacacgtttta 1416821  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 29644825 - 29644777
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataaaca 76  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||||    
T  29644825 tgtacctcattatattgaacatctgattattaatgaaatgctataaaca 29644777  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8274754 - 8274813
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaa 60  Q
    |||||||||| |||| |||||||||  ||||||||||||||| |||||||| ||| ||||    
T  8274754 attagctagttccactacttattcttatgtacctcgttgtatcgaacatctgattcttaa 8274813  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 13699028 - 13698983
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||||    
T  13699028 tgtacctcgttgtattgaacaagttattattaataaaatgcaataa 13698983  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 17758999 - 17759044
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||| || |||||||||| |||||| ||||||||||||||||    
T  17758999 tgtacctcattatattgaacattttattaataatgaaatgctataa 17759044  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 23622610 - 23622646
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||||||||||||||||||||||    
T  23622610 ttgtattgaatctcttattattaatgaaatgctataa 23622646  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 41344319 - 41344364
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  41344319 tgtacctcgttgtattgaacatctgattattaatgaaatgctataa 41344364  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 2246754 - 2246718
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2246754 ttgtattgaacctcttattattaatgaaatgctataa 2246718  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 9530635 - 9530672
Alignment:
Q  36 gttgtattgaacatcttattattaatgaaatgctataa 73  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9530635 gttgtattgaacatattatcattaatgaaatgctataa 9530672  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 11840284 - 11840332
Alignment:
Q  28 tgtacctcgttgtattgaacatcttattattaatgaaatgctataaaca 76  Q
    |||||||| |||||||||||| |||||| ||||| ||||| ||||||||    
T  11840284 tgtacctcattgtattgaacaacttattgttaataaaatgttataaaca 11840332  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 26131927 - 26131995
Alignment:
Q  5 gctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||| | ||||| |  |||||||||||||||| |    ||||||||||||||||||||||||    
T  26131927 gctagtcccactatttattatcgtgtacctcgttgtattaactcacttattattaatgaaatgctataa 26131995  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 37590070 - 37590034
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||||||||||||||||||||||    
T  37590070 ttgtattgaaactcttattattaatgaaatgctataa 37590034  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12698968 - 12698909
Alignment:
Q  1 attagctagtcccaccacttattctattgtacctcgttgtattgaacatcttattattaa 60  Q
    |||||||||| |||| ||||||| || ||||||||||| |||| |||| |||||||||||    
T  12698968 attagctagttccactacttattataatgtacctcgttatattaaacaacttattattaa 12698909  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 33480497 - 33480538
Alignment:
Q  35 cgttgtattgaacatcttattattaatgaaatgctataaaca 76  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  33480497 cgttgtattgaatctattattattaatgaaatgctataaaca 33480538  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 13686115 - 13686151
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||||||||||||||||||||||    
T  13686115 ttgtattgaatctcttattattaatgaaatgctataa 13686151  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 62521 - 62485
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||  |||||||||||||||||||||||||    
T  62521 ttgtattgaaactcttattattaatgaaatgctataa 62485  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 44584 - 44620
Alignment:
Q  37 ttgtattgaacatcttattattaatgaaatgctataa 73  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  44584 ttgtattgaacctcttattattaatgaaattctataa 44620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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