View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8676_low_16 (Length: 220)
Name: NF8676_low_16
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8676_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 56231331 - 56231543
Alignment:
| Q |
1 |
catagatagagattttgatgctagtgttcaactccataatggacaacactttagggtattatccaatttttcttcttgt---gacataccattaattaac |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
56231331 |
catagatagagattttgatgctagtgttcaactccataatggacaacactttagggtattatccaatttttcttcttcttttgacataccattaattaac |
56231430 |
T |
|
| Q |
98 |
caagtc---aagttttccattttcttctctaatatttccattactgattgattatcagggagatagcctttctatagctttgccagaaaacaagctttat |
194 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231431 |
caagtcgtcaagttttccattttcttctctaatatttccattactgattgattatcagggagatagcctttctatagctttgccagaaaacaagctttat |
56231530 |
T |
|
| Q |
195 |
cccctcattactg |
207 |
Q |
| |
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||||||||||||| |
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| T |
56231531 |
cccctcattactg |
56231543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 39189059 - 39189280
Alignment:
| Q |
3 |
tagatagagattttgatgctagtgttcaactccataatggacaacactttagggtattatccaatttttcttc---ttgtgacataccattaattaac-c |
98 |
Q |
| |
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|||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || | |
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| T |
39189059 |
tagatagagagtttgatactgttgttcaactccataatggacaacactttaaggtattatccaatttttcttcatcttgtgacataccattaataaagtc |
39189158 |
T |
|
| Q |
99 |
aagt----caagttttc---------cattttcttctctaatatttccattactgattgattatcagggagatagcctttctatagctttgccagaaaac |
185 |
Q |
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|||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
39189159 |
aagtttttcattttttctatcacttccattttcttctctaatatttccattatcgattgattatcagggagctagcctttctacagctttgccagaaaac |
39189258 |
T |
|
| Q |
186 |
aagctttatcccctcattactg |
207 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
39189259 |
aagctttatccactcattactg |
39189280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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