View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8676_low_18 (Length: 217)

Name: NF8676_low_18
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8676_low_18
NF8676_low_18
[»] chr1 (3 HSPs)
chr1 (18-208)||(19223780-19223970)
chr1 (18-208)||(9756576-9756766)
chr1 (90-191)||(39476630-39476731)
[»] scaffold0527 (2 HSPs)
scaffold0527 (18-208)||(499-688)
scaffold0527 (18-208)||(8562-8751)
[»] chr7 (4 HSPs)
chr7 (28-208)||(10983763-10983942)
chr7 (77-142)||(48358205-48358270)
chr7 (42-133)||(19414567-19414658)
chr7 (127-189)||(17915574-17915636)
[»] chr5 (4 HSPs)
chr5 (18-208)||(24163592-24163781)
chr5 (32-156)||(19569697-19569820)
chr5 (46-186)||(21391296-21391436)
chr5 (18-136)||(9824132-9824249)
[»] scaffold0711 (1 HSPs)
scaffold0711 (44-188)||(1680-1824)
[»] chr8 (7 HSPs)
chr8 (18-208)||(5826186-5826375)
chr8 (18-208)||(5828785-5828974)
chr8 (18-160)||(24987532-24987673)
chr8 (25-153)||(16227395-16227522)
chr8 (77-188)||(23432988-23433099)
chr8 (77-142)||(13645206-13645271)
chr8 (77-142)||(13745631-13745696)
[»] chr3 (3 HSPs)
chr3 (20-188)||(9323489-9323656)
chr3 (83-188)||(11829574-11829679)
chr3 (24-167)||(21318343-21318485)
[»] chr2 (3 HSPs)
chr2 (45-208)||(24215909-24216072)
chr2 (47-188)||(16152270-16152411)
chr2 (84-186)||(8685607-8685709)
[»] scaffold0300 (1 HSPs)
scaffold0300 (25-146)||(11996-12116)
[»] scaffold0068 (1 HSPs)
scaffold0068 (18-156)||(57017-57154)
[»] chr6 (1 HSPs)
chr6 (49-147)||(17208930-17209028)
[»] scaffold0041 (1 HSPs)
scaffold0041 (77-137)||(26398-26458)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 19223970 - 19223780
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19223970 tcttcggctccttttataggtagttgatttgagagacgttggggaataaggtcagcgctaatagtgttgtttagaagcttcaatcacaaatgttggccct 19223871  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19223870 ttggattacatggataattccgttggaaagcactttgattttcctttgctcaaagaggaattatccgttgcttttctcgttcctgatgtcc 19223780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 9756766 - 9756576
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| ||||||| ||||||  ||||||||||||||||||||  || |||| |||||| ||||| |||||| |||| |||  ||||  || ||||||||     
T  9756766 tcttcagctccttatataggccgttgatttgagagacgttggagaagagtgccagcgcaaatagagtcgttgagaatctttgatcaagaacgttggccca 9756667  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||  ||| ||||||| ||| |||||||||  |||||| ||||  ||||| ||||  ||| ||||||||||||| || |||| ||||||||    
T  9756666 ttgcctgatatggatacttctgttggaaagtcctttgaatttccattgctgaaagtagaagtatctgttgctttccttgttcttgatgtcc 9756576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 39476630 - 39476731
Alignment:
Q  90 agaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgct 189  Q
    ||||||||||||||  || ||||||| ||||  ||| || |||||||| |||| |||| ||||||| | || |||||| |||| ||||| || |||||||    
T  39476630 agaagcttcaatcatgaacgttggccatttgtctgatatagataattctgttgaaaagtactttgaatctcttttgctgaaaggggaataatttgttgct 39476729  T
Q  190 tt 191  Q
    ||    
T  39476730 tt 39476731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 688 - 499
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| |||||||||||||||||| ||||||| || ||||||  || ||| ||||| | ||||| |||||| |||||||||||||||||| |||||||||    
T  688 tcttcagctccttttataggtagt-gatttgaaagtcgttggagaagagtttcagcccaaatagagtcgttaagaagcttcaatcacaaacgttggccct 590  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||  ||| ||||||||| | ||||||||| ||||||| | || |||||| |||| ||||||||| |||| ||| ||||||||||||||||    
T  589 ttgcctgatatggataatcctgttggaaagtactttgaatctcctttgctaaaaggggaattatccgttgttttcctcgttcctgatgtcc 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 8751 - 8562
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| |||||||||||||||||| ||||||| || ||||||  || ||| ||||| | ||||| |||||| |||||||||||||||||| |||||||||    
T  8751 tcttcagctccttttataggtagt-gatttgaaagtcgttggagaagagtttcagcccaaatagagtcgttaagaagcttcaatcacaaacgttggccct 8653  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||  ||| ||||||||| | ||||||||| ||||||| | || |||||| |||| ||||||||| |||| ||| ||||||||||||||||    
T  8652 ttgcctgatatggataatcctgttggaaagtactttgaatctcctttgctaaaaggggaattatccgttgttttcctcgttcctgatgtcc 8562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 10983942 - 10983763
Alignment:
Q  28 cttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgaca 127  Q
    |||||||||||||| |||||||||||||||||  || | ||||||||| ||||| ||| || ||||| ||  ||||  |||||||||||||||  ||| |    
T  10983942 cttttataggtagt-gatttgagagacgttggagaagaatgtcagcgcaaatagagtcattgagaaggtttgatcatgaatgttggccctttgcctgata 10983844  T
Q  128 tggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||||||| ||||||||||| ||||||| |||| |||||| |||    |||||| |||| || ||||||||| ||||||||    
T  10983843 tggataatcccgttggaaagtactttgaatttcctttgctgaaaataaaattatatgttcctcttctcgttcttgatgtcc 10983763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 48358270 - 48358205
Alignment:
Q  77 aatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttg 142  Q
    ||||| |||||| ||||||||||||||  || ||||||||||||  ||| ||||||||||||||||    
T  48358270 aatagagtcgttgagaagcttcaatcaagaacgttggccctttgcctgatatggataattccgttg 48358205  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 19414567 - 19414658
Alignment:
Q  42 tgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggata 133  Q
    |||||||||||||||||   || ||||  ||||| ||||| |||||| ||||||||||||||| ||  |||||||||||  ||| |||||||    
T  19414567 tgatttgagagacgttgaagaagagtgcaagcgcaaatagagtcgttgagaagcttcaatcacgaactttggccctttgcttgatatggata 19414658  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 17915574 - 17915636
Alignment:
Q  127 atggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgct 189  Q
    ||||||||| || ||||||||  |||||| |||| |||||| ||||||||||||| |||||||    
T  17915574 atggataatcccattggaaagtcctttgaatttcctttgctgaaagaggaattatatgttgct 17915636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 24163592 - 24163781
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| ||||||| ||||||  ||||||||||||||||||||  || ||||||| | | ||||| |||||| ||||| ||||||||| ||  ||| || |    
T  24163592 tcttcagctccttatataggc-gttgatttgagagacgttggagaaaagtgtcatcacaaatagagtcgttgagaagattcaatcacgaacattgaccat 24163690  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||  |||  |||||||| ||||||||||| ||||||| | || |||||| |||| |||||||| ||||||||| |||||| || ||||||    
T  24163691 ttgcctgatttggataatcccgttggaaagtactttgaatctcctttgctgaaaggggaattatttgttgctttcctcgtttctaatgtcc 24163781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 19569820 - 19569697
Alignment:
Q  32 tataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatgga 131  Q
    |||||||||| ||||||||||||||||   || |||||||| |  ||||| || ||| ||||||||  ||||  |||||||||||||||   || |||||    
T  19569820 tataggtagt-gatttgagagacgttgaagaagagtgtcagtgaaaatagagttgttgagaagctttgatcaataatgttggccctttgctagatatgga 19569722  T
Q  132 taattccgttggaaagcactttgat 156  Q
    ||||| ||||||||||  |||||||    
T  19569721 taatttcgttggaaagtcctttgat 19569697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 21391436 - 21391296
Alignment:
Q  46 ttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaa 145  Q
    ||||||||||||||  || |||| || ||  ||||| |||||| |||| |||  ||||| ||||||||| |||||  ||| | ||||||| || ||||||    
T  21391436 ttgagagacgttggagaagagtgccaacgtaaatagagtcgttaagaatctttgatcacgaatgttggctctttgcctgatacggataatcccattggaa 21391337  T
Q  146 agcactttgattttcgtttgctcaaagaggaattatctgtt 186  Q
    || ||||||| |||| |||| | |||| |||||||| ||||    
T  21391336 agtactttgaatttcctttgttgaaaggggaattatttgtt 21391296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 9824132 - 9824249
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| ||||||| |||||||||  ||||||||||| ||||   || |||| |||||| ||||| |||||| ||||||||||||||  || |||  || |    
T  9824132 tcttcagctccttatataggtagg-gatttgagagatgttgaagaagagtgccagcgcaaatagagtcgttgagaagcttcaatcaataacgttcaccat 9824230  T
Q  118 ttggatgacatggataatt 136  Q
    ||| |||| ||||||||||    
T  9824231 ttgcatgatatggataatt 9824249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 1824 - 1680
Alignment:
Q  44 atttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttgg 143  Q
    ||||||||||||||||  || |||||||| |  ||||| || ||| ||||||||||||||  || |||||||||||| |||| || |||| ||||||||     
T  1824 atttgagagacgttggagaagagtgtcagtgtaaatagagttgttgagaagcttcaatcaagaacgttggccctttgtatgatatagatatttccgttga 1725  T
Q  144 aaagcactttgattttcgtttgctcaaagaggaattatctgttgc 188  Q
    ||||  |||||| |||| |||||| ||||| |||||||| |||||    
T  1724 aaagttctttgaatttcttttgctgaaagaagaattatccgttgc 1680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 5826186 - 5826375
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| |||||||||||||| ||| |||||||||||||| ||  || ||||||||||| ||||  |||||| ||||||||  ||||  || |||||||||    
T  5826186 tcttcagctccttttataggcagt-gatttgagagacgtgggagaaaagtgtcagcgcaaataaagtcgttgagaagctttgatcaagaaagttggccct 5826284  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||  ||| |||||||||   |||||||||  |||||| |||  |||||| ||||| |||||||| |||| | |  |||||| ||||||||    
T  5826285 ttgcctgatatggataatcgtgttggaaagtcctttgaattttctttgctgaaagaagaattatccgttgttctcttcgttcttgatgtcc 5826375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 5828785 - 5828974
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| |||||||||||||| ||| |||||||||||||| ||  || ||||||||||| ||||  |||||| ||||||||  ||||  || |||||||||    
T  5828785 tcttcagctccttttataggcagt-gatttgagagacgtgggagaaaagtgtcagcgcaaataaagtcgttgagaagctttgatcaagaaagttggccct 5828883  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    |||  ||| |||||||||   |||||||||  |||||| |||  |||||| ||||| |||||||| |||| | |  |||||| ||||||||    
T  5828884 ttgcctgatatggataatcgtgttggaaagtcctttgaattttctttgctgaaagaagaattatccgttgttctcttcgttcttgatgtcc 5828974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 24987673 - 24987532
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| || ||||||||||| ||| ||||||| |||||||||  || ||||||| ||||||||| |||||| ||||||||   |||  || |||||||||    
T  24987673 tcttcagccccttttataggcagt-gatttgaaagacgttggagaagagtgtcaacgctaatagagtcgttgagaagctttggtcaagaacgttggccct 24987575  T
Q  118 ttggatgacatggataattccgttggaaagcactttgattttc 160  Q
    |||  ||| |||||||||||||||||||||  |||||| ||||    
T  24987574 ttgcctgatatggataattccgttggaaagtcctttgaatttc 24987532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 16227395 - 16227522
Alignment:
Q  25 ctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatg 124  Q
    |||||| |||||||||| | ||||||||||  |||  || |||| || ||| ||||| |||||| ||||||||||| ||| || ||||||||||||  ||    
T  16227395 ctccttatataggtagt-gttttgagagacagtggataagagtgccaacgcaaatagagtcgttaagaagcttcaaccacgaacgttggccctttgcctg 16227493  T
Q  125 acatggataattccgttggaaagcacttt 153  Q
    | ||||||||| |||||||||||||||||    
T  16227494 atatggataatcccgttggaaagcacttt 16227522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 23433099 - 23432988
Alignment:
Q  77 aatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagagga 176  Q
    ||||| |||||| ||||||||||||||  || |||| |||||||  ||| |||||||||||||||||||    |||||| |||| |||||| ||||| ||    
T  23433099 aatagagtcgttaagaagcttcaatcaagaacgttgtccctttgcctgatatggataattccgttggaagatcctttgaatttcctttgctaaaagaaga 23433000  T
Q  177 attatctgttgc 188  Q
    | ||||||||||    
T  23432999 actatctgttgc 23432988  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 13645206 - 13645271
Alignment:
Q  77 aatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttg 142  Q
    ||||| |||||| ||||||||||||||  |||||||||||||||  ||| |||||||||| |||||    
T  13645206 aatagagtcgttgagaagcttcaatcaagaatgttggccctttgcctgatatggataatttcgttg 13645271  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 13745631 - 13745696
Alignment:
Q  77 aatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttg 142  Q
    ||||| |||||| ||||||||||||||  |||||||||||||||  ||| |||||||||| |||||    
T  13745631 aatagagtcgttgagaagcttcaatcaagaatgttggccctttgcctgatatggataatttcgttg 13745696  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 9323489 - 9323656
Alignment:
Q  20 ttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggcccttt 119  Q
    ||||||||||| |||||||||| ||  |||||||| ||||  || |||| || ||| ||||| |||||| ||||||||||||||  ||  ||||| ||||    
T  9323489 ttcggctccttatataggtagt-gaaatgagagacattggagaagagtgccaacgcaaatagagtcgttgagaagcttcaatcaagaacattggcgcttt 9323587  T
Q  120 ggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatctgttgc 188  Q
    |  ||| |||||||||||||||| |||| | ||||| |||| |||||| ||||| | ||||||| ||||    
T  9323588 gcctgatatggataattccgttgaaaagtattttgaatttcttttgctgaaagaaggattatctattgc 9323656  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 11829679 - 11829574
Alignment:
Q  83 gtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatc 182  Q
    |||||| ||||| ||||||||  |||||||||||||||  | | |||||||||||||||| ||||  |||| | |||| || ||| ||||| ||||||||    
T  11829679 gtcgttgagaagtttcaatcaagaatgttggccctttgccttatatggataattccgttgaaaagtcctttaaatttccttcgctgaaagaagaattatc 11829580  T
Q  183 tgttgc 188  Q
    ||||||    
T  11829579 tgttgc 11829574  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 21318343 - 21318485
Alignment:
Q  24 gctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggat 123  Q
    |||||||||||| | ||| |||||||||||| ||||  || |||||| |||| ||||  |||||| ||||||||  ||||  ||  |||||||||||  |    
T  21318343 gctccttttatatgcagt-gatttgagagactttggagaagagtgtcggcgcaaatatagtcgttgagaagctttgatcaagaacattggccctttgcct 21318441  T
Q  124 gacatggataattccgttggaaagcactttgattttcgtttgct 167  Q
    || ||| ||||||| |||||||||  |||||| |||| ||||||    
T  21318442 gatatgtataattctgttggaaagtcctttgaatttcctttgct 21318485  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 24215909 - 24216072
Alignment:
Q  45 tttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttgga 144  Q
    ||||||||| |||||  || |||  |||||| |||||  ||||| |||||||||||||||||| | ||||||||||  ||| |||||||||  |||||||    
T  24215909 tttgagagatgttggagaagagttccagcgcaaatagattcgttaagaagcttcaatcacaaacgatggccctttgactgatatggataatctcgttgga 24216008  T
Q  145 aagcactttgattttcgtttgctcaaagaggaattatctgttgcttttctcgttcctgatgtcc 208  Q
    ||| ||||||| ||||  ||||| ||||   ||||||   |||||||  |||||||||||||||    
T  24216009 aagtactttgaatttccgttgctgaaaggcaaattattcattgctttcttcgttcctgatgtcc 24216072  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 16152411 - 16152270
Alignment:
Q  47 tgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaaa 146  Q
    |||||||||||||  || |||| |||||| ||||   | ||| ||||||| ||||||  ||||||| ||||||   ||| ||||||||||||||||||||    
T  16152411 tgagagacgttggacaagagtgccagcgcaaataaatttgttgagaagctccaatcaagaatgttgcccctttttctgatatggataattccgttggaaa 16152312  T
Q  147 gcactttgattttcgtttgctcaaagaggaattatctgttgc 188  Q
    |  |||||| |||| |||||| ||||| ||||||| ||||||    
T  16152311 gtcctttgaatttcctttgctgaaagaagaattatatgttgc 16152270  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 8685607 - 8685709
Alignment:
Q  84 tcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaaagcactttgattttcgtttgctcaaagaggaattatct 183  Q
    ||||| ||||||||||||||  || |||| ||||||| |||| ||||||||||||||||| ||   |||||| |||| |||||| ||||| ||||||| |    
T  8685607 tcgttaagaagcttcaatcaagaaagttgtccctttgcatgatatggataattccgttggtaaatcctttgaatttcctttgctaaaagaagaattattt 8685706  T
Q  184 gtt 186  Q
    |||    
T  8685707 gtt 8685709  T

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Target: scaffold0300 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 11996 - 12116
Alignment:
Q  25 ctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatg 124  Q
    ||||||||||||||||| |||||||||||||||||  || |||||||| |  ||||| |||||  ||||||||  ||||| |||||| ||||||||  ||    
T  11996 ctccttttataggtagt-gatttgagagacgttggagaagagtgtcagtgtaaatagagtcgtggagaagctttgatcacgaatgttagccctttgcctg 12094  T
Q  125 acatggataattccgttggaaa 146  Q
    | | ||||| |||| |||||||    
T  12095 atacggatagttcccttggaaa 12116  T

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Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 57154 - 57017
Alignment:
Q  18 tcttcggctccttttataggtagttgatttgagagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccct 117  Q
    ||||| |||||||||||||| || || |||||||||| ||||  || |||||||||   ||||| ||||||  |||| ||| ||||| ||| ||| ||||    
T  57154 tcttcagctccttttataggcag-tgctttgagagacattggagaagagtgtcagcaaaaatagagtcgttgggaagtttcgatcacgaatattgaccct 57056  T
Q  118 ttggatgacatggataattccgttggaaagcactttgat 156  Q
    |||  ||| ||||||||| |||||| |||| ||||||||    
T  57055 ttgcctgatatggataatcccgttgaaaagtactttgat 57017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 17208930 - 17209028
Alignment:
Q  49 agagacgttgggaaatagtgtcagcgctaatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattccgttggaaag 147  Q
    |||||||||||  || ||||||||| | |||||  ||||| ||||||||||||||  || ||||||||||||  ||| || ||||||||||||| ||||    
T  17208930 agagacgttggagaagagtgtcagcacaaatagaatcgttgagaagcttcaatcaagaacgttggccctttgcctgatatagataattccgttgaaaag 17209028  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 26398 - 26458
Alignment:
Q  77 aatagtgtcgtttagaagcttcaatcacaaatgttggccctttggatgacatggataattc 137  Q
    ||||| |||||| ||||||||||||||  || ||||||||||||  ||| |||||||||||    
T  26398 aatagagtcgttcagaagcttcaatcaagaacgttggccctttgcctgatatggataattc 26458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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