View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8676_low_8 (Length: 289)
Name: NF8676_low_8
Description: NF8676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8676_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 42845911 - 42846175
Alignment:
| Q |
17 |
catggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacagggctactgatcttgtgtggctgagagatgtttc |
116 |
Q |
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| T |
42845911 |
catggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacagggctactgatcttgtgtggctgagagatgtttc |
42846010 |
T |
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| Q |
117 |
acctgactaagcaaaataattcatgctcagcataaggggatcgggaatgaaaagtgtggagtgcatgcgaccattctcgtcatcctcgttgtctctaaat |
216 |
Q |
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| T |
42846011 |
acctgactaagcaaaataattcatgctcaacataaggggatcgggaatgaaaagtgtggagtgcatgcgaccattctcgtcatcctcgttgtctctaaat |
42846110 |
T |
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| Q |
217 |
acttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctctgct |
281 |
Q |
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| T |
42846111 |
acttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctttgct |
42846175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 42825334 - 42825407
Alignment:
| Q |
194 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatcc |
267 |
Q |
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| T |
42825334 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcc |
42825407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 41980173 - 41980247
Alignment:
| Q |
57 |
cctgaatctactcgttgatgcacacagggctactgatcttgtgtggctgagagatgtttcacctgactaagcaaa |
131 |
Q |
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| T |
41980173 |
cctgaatctactcgttgaaaaacacggggctattgatctcgagtggcttagagatgttccacctgaccaagcaaa |
41980247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 41980450 - 41980495
Alignment:
| Q |
134 |
aattcatgctcagcataaggggatcgggaatgaaaagtgtggagtg |
179 |
Q |
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| T |
41980450 |
aattcttgctcagcataaggggattgggattgaaaagtgtggagtg |
41980495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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