View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8677_high_2 (Length: 339)

Name: NF8677_high_2
Description: NF8677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8677_high_2
NF8677_high_2
[»] chr8 (5 HSPs)
chr8 (19-161)||(32847883-32848025)
chr8 (217-324)||(32848022-32848129)
chr8 (125-304)||(11364555-11364737)
chr8 (154-318)||(9617871-9618043)
chr8 (36-84)||(17479728-17479776)
[»] chr7 (7 HSPs)
chr7 (138-306)||(29367291-29367463)
chr7 (159-308)||(32471143-32471301)
chr7 (121-302)||(42863670-42863854)
chr7 (154-209)||(29346783-29346838)
chr7 (237-321)||(35199381-35199465)
chr7 (121-199)||(3756740-3756816)
chr7 (156-199)||(39773360-39773403)
[»] chr5 (1 HSPs)
chr5 (121-308)||(34272322-34272511)
[»] chr3 (5 HSPs)
chr3 (211-320)||(531157-531268)
chr3 (211-320)||(564112-564223)
chr3 (125-181)||(564224-564280)
chr3 (125-181)||(531269-531325)
chr3 (215-308)||(46505965-46506057)
[»] chr1 (3 HSPs)
chr1 (138-268)||(29274555-29274690)
chr1 (236-306)||(49138139-49138208)
chr1 (156-199)||(12900877-12900920)
[»] chr6 (2 HSPs)
chr6 (123-324)||(29181546-29181753)
chr6 (211-261)||(15091898-15091948)
[»] chr4 (3 HSPs)
chr4 (155-301)||(4848782-4848930)
chr4 (228-308)||(45610619-45610699)
chr4 (157-199)||(49272661-49272703)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 32847883 - 32848025
Alignment:
Q  19 atataatatcttgcctattacttagaacaggctcaggctcaaaagggagacacgtttttcttgaaaaagattcataagcggaagaacctaaattgataga 118  Q
    ||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  32847883 atataatgtgttgcctattacctagaacaggctcaggttcaaaagggagacacgtttttcttgaaaaagattcataagcgggagaaccgaaattgataga 32847982  T
Q  119 tgagagttggtgttcttaatacataaaagagataggaaaagat 161  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32847983 tgagagttggtgttcttaatacataaaagagataggaaaagat 32848025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 32848022 - 32848129
Alignment:
Q  217 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccac 316  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32848022 agatgagagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccac 32848121  T
Q  317 atgttcat 324  Q
    ||||||||    
T  32848122 atgttcat 32848129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 304
Target Start/End: Original strand, 11364555 - 11364737
Alignment:
Q  125 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt---gagggagagatg 221  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||||||    | || |||| |    
T  11364555 ttggtgttcttagtacataaaagggaaaggaaaagatagaagaagaccaagtcgaaagacttaagccattactctacttgagagtaccaaaggggagagg 11364654  T
Q  222 agagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttagg 304  Q
    ||| | |   ||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  11364655 agatactatgtcatttttcttcataccccttagtgatcatcatttctctatttatgcacaatccaagcttccttaattttagg 11364737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 9617871 - 9618043
Alignment:
Q  154 gaaaagatagaagaagactaagtccaaagacttaagccattactc----ttcaagagagt----gagggagagatgagagagttcatcagttttcttcat 245  Q
    ||||||||||||||||||||| | |||| ||||||| ||||||||    | | |||||||     ||| ||||| || ||| ||| ||| ||||||||||    
T  9617871 gaaaagatagaagaagactaaatacaaaaacttaagtcattactccctatactagagagtaccacaggaagagaggaaagacttcttcatttttcttcat 9617970  T
Q  246 acccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacat 318  Q
    ||  ||| ||| |||||  ||  || ||||||||||||| ||||||| |||||| ||||||||  ||||||||    
T  9617971 acttattgttgttcatccttttcctgtttatgcacaatccaaacttcattgattctaggatcactagccacat 9618043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 17479776 - 17479728
Alignment:
Q  36 ttacttagaacaggctcaggctcaaaagggagacacgtttttcttgaaa 84  Q
    ||||||| |||||| ||||| ||||||||||||||  ||||||||||||    
T  17479776 ttacttacaacaggttcaggttcaaaagggagacaattttttcttgaaa 17479728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 29367291 - 29367463
Alignment:
Q  138 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt----gagggagagatgagagagttcatc 233  Q
    ||||||||||||| ||  || |||||||||||||||||||| |||||||||| ||||||||| | |||||||     || ||||||||| ||| ||||||    
T  29367291 tacataaaagagaaagagaaggatagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagagagatgatagacttcatc 29367390  T
Q  234 agttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 306  Q
    | ||||||||||||||| | |||||||||| ||| ||||||||| | || | ||| ||| || ||||||||||    
T  29367391 acttttcttcatacccactgttgatcatcatttcactatttatgtataacccaaagttctttaattttaggat 29367463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 308
Target Start/End: Original strand, 32471143 - 32471301
Alignment:
Q  159 gatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagatgagagagttcatcagttttcttcataccca---- 250  Q
    |||||||||||||||||| ||||||| ||||  |||||||   | ||||||     ||||||||| |||||| ||||||| ||||||||||| ||         
T  32471143 gatagaagaagactaagttcaaagacataagttattactcgcaaggagagtaccaaagggagagaggagagacttcatcaattttcttcataacccggcc 32471242  T
Q  251 -ttattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 308  Q
     | | ||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  32471243 ctcagtgatcatcatttctctatttatgcacaatccaagcttccttgattttaggatca 32471301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 42863854 - 42863670
Alignment:
Q  121 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 216  Q
    ||||||||| |||||| |||| | |||| | || |||||||||||||||||  ||||| |||||||||| ||||||||| | |  |||||    | ||||    
T  42863854 agagttggtattcttagtaca-ataagaaaaagaaaaagatagaagaagacctagtcctaagacttaagtcattactctaccaatgagtgtcaaaaggag 42863756  T
Q  217 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgatttta 302  Q
    ||| |||||| ||  ||| |||||||||||||  ||| ||| ||||| | |||||||||||||||||| || ||||||| ||||||    
T  42863755 agaagagagacttggtcatttttcttcatacctcttagtgaccatcattcctctatttatgcacaatctaagcttccttaatttta 42863670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 29346783 - 29346838
Alignment:
Q  154 gaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt 209  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||  ||||||||    
T  29346783 gaaaagatagaagaagacttagtccaaagacttaagtcattaccctcaaagagagt 29346838  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 35199381 - 35199465
Alignment:
Q  237 tttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgtt 321  Q
    |||||||||| | |||||||||||| | |||| ||||||||||||| | ||| ||||||  ||||| |||||  |||||||||||    
T  35199381 tttcttcatatcaattattgatcataatttctttatttatgcacaacccaaatttccttagttttaagatcactagccacatgtt 35199465  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 3756740 - 3756816
Alignment:
Q  121 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactct 199  Q
    |||||||||||||||| ||||||||| | || |  ||||||||||||||||  ||||| | |||||||| |||||||||    
T  3756740 agagttggtgttcttagtacataaaaaaaatcg--aaagatagaagaagacctagtcctaggacttaagtcattactct 3756816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 39773403 - 39773360
Alignment:
Q  156 aaagatagaagaagactaagtccaaagacttaagccattactct 199  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||    
T  39773403 aaagatagaagaagacttagtctaaagacctaagccattactct 39773360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 34272511 - 34272322
Alignment:
Q  121 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 216  Q
    ||||||||||||||||| | |||||| ||| ||| ||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||     | ||||    
T  34272511 agagttggtgttcttaaaagataaaa-agaaagggaaatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatggag 34272414  T
Q  217 agatgagagag-ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 308  Q
    ||| |||| |  ||||||| ||||||||||||||||||||  | |||| || ||||||||||||||||| || | ||||||||||||||||||    
T  34272413 aga-gagaaaaattcatcaattttcttcatacccattattatttatcatttttctatttatgcacaatctaagcatccttgattttaggatca 34272322  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 531268 - 531157
Alignment:
Q  211 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 308  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  531268 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 531169  T
Q  309 tgagccacatgt 320  Q
    | |||| |||||    
T  531168 ttagccgcatgt 531157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 564223 - 564112
Alignment:
Q  211 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 308  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  564223 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 564124  T
Q  309 tgagccacatgt 320  Q
    | |||| |||||    
T  564123 ttagccgcatgt 564112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 564280 - 564224
Alignment:
Q  125 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 181  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||    
T  564280 ttggtgttcttagtgcataaaagagaaaggaaaagatagaagaagaccaagtccaaa 564224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 531325 - 531269
Alignment:
Q  125 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 181  Q
    ||||||| |||| || |||||||||| |||||||||||||||||||| |||||||||    
T  531325 ttggtgtccttagtagataaaagagaaaggaaaagatagaagaagaccaagtccaaa 531269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 46506057 - 46505965
Alignment:
Q  215 agagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 308  Q
    ||||| |||||| ||||||| | ||||||| ||||| |||||||| ||  ||| |||||||||||| ||| ||  |||||| ||||||||||||    
T  46506057 agagaggagagacttcatcaatattcttcacacccactattgatcctcctttcactatttatgcac-atccaaggttcctttattttaggatca 46505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 268
Target Start/End: Complemental strand, 29274690 - 29274555
Alignment:
Q  138 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt-------gagggagagatgagagagttc 230  Q
    ||||||||||| | || ||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||       |||||||||  |||||| |||    
T  29274690 tacataaaagataaagaaaaagatagaagaaggctaagtccaaggacttaaaccattactctactagagagtatcaaaggagggagag--gagagacttc 29274593  T
Q  231 atcagttttcttcatacccattattgatcatcaattct 268  Q
    |||| | || |||||||| |||||||||||||| ||||    
T  29274592 atcattatttttcataccaattattgatcatcatttct 29274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 49138208 - 49138139
Alignment:
Q  236 ttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 306  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| |||||| || ||||||| ||||||||||    
T  49138208 ttttcttcatacccattattgat-atcattttcctatttatgtacaatccaagcttcctttattttaggat 49138139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 12900920 - 12900877
Alignment:
Q  156 aaagatagaagaagactaagtccaaagacttaagccattactct 199  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  12900920 aaagatagaagaagacttagttcaaagacctaagccattactct 12900877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 324
Target Start/End: Complemental strand, 29181753 - 29181546
Alignment:
Q  123 agttggtgttcttaatacataaaaga---gataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----aggga 215  Q
    |||||||||||||| |||||||||||   || | | ||||||| ||||| ||||||||| |||||| ||| ||||||||| | | |||||     |||||    
T  29181753 agttggtgttcttagtacataaaagaagagaaaaggaaagatacaagaaaactaagtcccaagact-aagtcattactctactaaagagtactaaaggga 29181655  T
Q  216 gagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagcca 315  Q
    |||| |||||| | || || | |||||||  || |||||||||||| | ||  ||||||||||| |  | ||||||| |||||||||||||||  |||||    
T  29181654 gagaggagagactccagcaatattcttcacccctattattgatcattattttcctatttatgcatatcccaaacttctttgattttaggatcactagcca 29181555  T
Q  316 catgttcat 324  Q
    | |||||||    
T  29181554 cttgttcat 29181546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 15091898 - 15091948
Alignment:
Q  211 agggagagatgagagagttcatcagttttcttcatacccattattgatcat 261  Q
    ||||||||||||| || ||||||| ||||||||||| ||| ||||||||||    
T  15091898 agggagagatgagtgacttcatcaattttcttcatatccactattgatcat 15091948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 4848930 - 4848782
Alignment:
Q  155 aaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt--gagggagagatgagagagttcatcagttttcttcatacccatt 252  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||| | |||||||||   |  ||||||  ||||| |||| || |||||||  | || |||    
T  4848930 aaaatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttcctatt 4848831  T
Q  253 attgatcatcaattctctatttatgcacaatcaaaacttccttgatttt 301  Q
    |||||||| || |||| || ||||||| |||| || |||||||||||||    
T  4848830 attgatcaccatttctatacttatgcataatccaagcttccttgatttt 4848782  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 45610699 - 45610619
Alignment:
Q  228 ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 308  Q
    ||||||| | ||||||||| ||||||||||| |||  | | |||||||||||||| |||| |||||||||| |||| ||||    
T  45610699 ttcatcaatattcttcataaccattattgataatctttcccctatttatgcacaaccaaaccttccttgatcttagaatca 45610619  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 49272703 - 49272661
Alignment:
Q  157 aagatagaagaagactaagtccaaagacttaagccattactct 199  Q
    |||||||||||||||| |||||||| ||||||| |||||||||    
T  49272703 aagatagaagaagacttagtccaaaaacttaagtcattactct 49272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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