View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8677_low_10 (Length: 226)
Name: NF8677_low_10
Description: NF8677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8677_low_10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 16865363 - 16865154
Alignment:
| Q |
1 |
atagtcaaccccaagtttctgagcatatccattagcaaccaatctggctttgtacttttcaatttcccctttttcattcatcttagttttatatatccac |
100 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
16865363 |
atagtcaaccccaagttacggagcatatccattagcaaccaatctggctttgtacttttcaatttcccttttttcattcagcttagttttatatatccac |
16865264 |
T |
|
| Q |
101 |
ttaactcctatcttcttgcaacctgttggtaaatcaataagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctccata |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16865263 |
ttaactcctatcttcttgcaacctgctggtaaatcagtaagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctcaata |
16865164 |
T |
|
| Q |
201 |
ccttcatctt |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
16865163 |
ccttcatctt |
16865154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 40611000 - 40611208
Alignment:
| Q |
2 |
tagtcaaccccaagtttctgagcatatccattagcaaccaatctggctttgtacttttcaatttcccctttttcattcatcttagttttatatatccact |
101 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||| ||| ||||| ||| |||||||||||||||||||||| |||| |||| || ||||| | |
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| T |
40611000 |
tagtcaactccaagcttctgagcatatcccttagcaaccaatatggttttgtgcttctcaatttcccctttttcattcagcttacttttgtaaatccatt |
40611099 |
T |
|
| Q |
102 |
taactcctatcttcttgcaacctgttggtaaatcaataagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctccatac |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| || || |||||||| || ||||||||||||||||| || |
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| T |
40611100 |
taactcctatcttcttgcaacctgctggtaaatcagtaagttcccaagtgttgttactttctattgagtcaatttcttgtttcatagcttctctccacac |
40611199 |
T |
|
| Q |
202 |
cttcatctt |
210 |
Q |
| |
|
||||||||| |
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|
| T |
40611200 |
cttcatctt |
40611208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 20544321 - 20544114
Alignment:
| Q |
2 |
tagtcaaccccaagtttctgagcatatccattagcaaccaatctggctttgtacttttcaatttcccctttttcattcatcttagttttatatatccact |
101 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||||||||||||||||||||| ||| | |||| |||||||||| |||| ||||||||| || ||||| | |
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|
| T |
20544321 |
tagtcaaatccaagcttttgagcatatcccttagcaaccaatctggctttgtgcttctaaatt-cccctttttcgttcagcttagttttgtaaatccatt |
20544223 |
T |
|
| Q |
102 |
taactcctatcttcttgcaacctgttggtaaatcaataagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctccatac |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| || || |||||||| || ||||||||||||||| | | |
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|
| T |
20544222 |
taactcctatcttcttgcaacctgctggtaaatcagtaagttcccaagtgttgtaactttctattgagtcaatttcttgtttcatagcttctctcaacat |
20544123 |
T |
|
| Q |
202 |
cttcatctt |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
20544122 |
cttcatctt |
20544114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 42970726 - 42970656
Alignment:
| Q |
47 |
gctttgtacttttcaatttcccctttttcattcatcttagttttatatatccacttaactcctatcttctt |
117 |
Q |
| |
|
|||||||| ||||||| || |||||| ||||| | ||||||||||| | ||||||||| ||||||||||| |
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|
| T |
42970726 |
gctttgtatttttcaactttccctttctcattgagtttagttttatagacccacttaacacctatcttctt |
42970656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 3013308 - 3013509
Alignment:
| Q |
5 |
tcaaccccaagtttctgagcatatccattagcaaccaatctggctttgtacttttcaatttcccctttttcattcatcttagttttatatatccacttaa |
104 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| || ||||| |||||||| || |||| || ||||| ||||||| || || || |||||||| ||| |
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|
| T |
3013308 |
tcaatcccaagcttctgagcatatcccttagctactaatctagctttgtatttctcaacctctcctttctcattcaatttggtcttttatatccatttat |
3013407 |
T |
|
| Q |
105 |
ctcctatcttcttgcaacctgttggtaaatcaataagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctccatacctt |
204 |
Q |
| |
|
|| || |||||||| || | |||||| | |||||||||| ||||||| |||||||| || || |||||||||||||| |||||||||||||| || |
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| T |
3013408 |
aaccaattttcttgcatccagcaggtaaagtagcaagttcccaagtgttgttgctttcaatggaatctatttcctgcttcattgcttctctccatacttt |
3013507 |
T |
|
| Q |
205 |
ca |
206 |
Q |
| |
|
|| |
|
|
| T |
3013508 |
ca |
3013509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5145258 - 5145432
Alignment:
| Q |
20 |
tgagcatatccattagcaaccaatctggctttgtacttttcaatttcccctttttcattcatcttagttttatatatccacttaactcctatcttcttgc |
119 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||||||||| |||| ||||||| || ||||| |||||| ||||||| ||| |||||||| || ||||||| |
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|
| T |
5145258 |
tgagcatatcccttagctactaatctagctttgtacttctcaaactccccttctt-attcagcttagtcttatatacccatttaactccaattttcttgc |
5145356 |
T |
|
| Q |
120 |
aacctgttggtaaatcaataagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctcca |
198 |
Q |
| |
|
| || ||||||||||| ||||||||| |||| || ||||| || ||||| ||||| || ||||| || |||||||| |
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|
| T |
5145357 |
a---tgcaggtaaatcaatgagttcccaagtgttattgctttctatggattctatttcatgtttcattgcatctctcca |
5145432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 20530845 - 20530777
Alignment:
| Q |
138 |
taagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctccataccttca |
206 |
Q |
| |
|
||||||||||| |||| || |||||||| || || ||||| |||||||| ||||||||||| ||||||| |
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|
| T |
20530845 |
taagttcccaagtgttattgctttcaatggagtctatttcttgcttcattgcttctctccaaaccttca |
20530777 |
T |
|
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